Sequence Similarity Clusters for the Entities in PDB 1MVM

Entity #1 | Chains: A
PROTEIN (MURINE MINUTE VIRUS COAT PROTEIN) protein, length: 587 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 31305
95 % 5 5 13679 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 5 5 13459
70 % 6 6 823
50 % 19 20 477
40 % 19 20 515
30 % 19 20 512
Entity #2 | Chains: B
DNA (5'-D(*CP*CP*AP*CP*CP*CP*CP*AP*AP*CP*A)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
DNA (5'-D(*CP*AP*AP*A)-3') dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
DNA (5'-D(P*A)-3') dna, length: 1 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.