Sequence Similarity Clusters for the Entities in PDB 1MVM

Entity #1 | Chains: A
PROTEIN (MURINE MINUTE VIRUS COAT PROTEIN) protein, length: 587 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 31453
95 % 5 5 13734 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 5 5 13514
70 % 6 6 826
50 % 19 20 478
40 % 19 20 520
30 % 19 20 517
Entity #2 | Chains: B
DNA (5'-D(*CP*CP*AP*CP*CP*CP*CP*AP*AP*CP*A)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
DNA (5'-D(*CP*AP*AP*A)-3') dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
DNA (5'-D(P*A)-3') dna, length: 1 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures