Sequence Similarity Clusters for the Entities in PDB 1MVF

Entity #1 | Chains: A,B
immunoglobulin heavy chain variable region protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45212
95 % 1 1 33984 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 32464
70 % 76 383 9
50 % 96 580 7
40 % 145 933 5
30 % 160 1061 7
Entity #2 | Chains: D,E
PemI-like protein 1 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29897
95 % 1 2 24782 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 1 2 23968
70 % 1 2 21792
50 % 1 2 18847
40 % 1 2 16787
30 % 1 2 14379

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures