Sequence Similarity Clusters for the Entities in PDB 1MVF

Entity #1 | Chains: A,B
immunoglobulin heavy chain variable region protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45946
95 % 1 1 34471 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 32917
70 % 79 397 9
50 % 99 594 7
40 % 148 948 5
30 % 163 1077 7
Entity #2 | Chains: D,E
PemI-like protein 1 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 30409
95 % 1 2 25156 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 1 2 24321
70 % 1 2 22102
50 % 1 2 19107
40 % 1 2 17009
30 % 1 2 14566

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures