Sequence Similarity Clusters for the Entities in PDB 1MUJ

Entity #1 | Chains: A
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-B ALPHA CHAIN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 3399
95 % 3 16 2333 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 3 23 1472
70 % 8 44 756
50 % 34 149 180
40 % 34 149 196
30 % 67 310 98
Entity #2 | Chains: B
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A BETA CHAIN protein, length: 197 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61788
95 % 1 1 43127
90 % 2 14 3600
70 % 33 140 164
50 % 34 149 179
40 % 34 149 195
30 % 68 310 98
Entity #3 | Chains: C
CLIP peptide protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74088
95 % 1 1 51641
90 % 1 1 49007
70 % 1 1 42917
50 % 1 1 36609
40 % 1 1 32255
30 % 1 1 27324

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.