Sequence Similarity Clusters for the Entities in PDB 1MUJ

Entity #1 | Chains: A
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-B ALPHA CHAIN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 3197
95 % 3 16 2203
90 % 3 23 1383
70 % 8 44 705
50 % 31 144 180
40 % 31 144 195
30 % 61 300 91
Entity #2 | Chains: B
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A BETA CHAIN protein, length: 197 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58798
95 % 1 1 40977
90 % 2 14 3426
70 % 30 135 166
50 % 31 144 179
40 % 31 144 194
30 % 62 300 91
Entity #3 | Chains: C
CLIP peptide protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70648
95 % 1 1 49170
90 % 1 1 46742
70 % 1 1 41120
50 % 1 1 35205
40 % 1 1 31042
30 % 1 1 26290

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.