Sequence Similarity Clusters for the Entities in PDB 1MUJ

Entity #1 | Chains: A
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-B ALPHA CHAIN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 3747
95 % 3 16 2444 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 6 26 1421
70 % 12 48 701
50 % 43 161 185
40 % 43 161 197
30 % 85 334 104
Entity #2 | Chains: B
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A BETA CHAIN protein, length: 197 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58939
95 % 1 1 48062
90 % 5 17 3103
70 % 43 159 156
50 % 43 161 186
40 % 43 161 198
30 % 86 334 104
Entity #3 | Chains: C
CLIP peptide protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55179
95 % 1 1 45321
90 % 1 1 43115
70 % 1 1 37982
50 % 1 1 32235
40 % 1 1 28235
30 % 1 1 23581

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures