Sequence Similarity Clusters for the Entities in PDB 1MUJ

Entity #1 | Chains: A
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-B ALPHA CHAIN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 3488
95 % 3 16 2407 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 6 26 1399
70 % 12 48 695
50 % 43 161 179
40 % 43 161 194
30 % 85 334 89
Entity #2 | Chains: B
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A BETA CHAIN protein, length: 197 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63029
95 % 1 1 43940
90 % 5 17 3069
70 % 42 152 159
50 % 43 161 178
40 % 43 161 193
30 % 86 334 89
Entity #3 | Chains: C
CLIP peptide protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75459
95 % 1 1 52501
90 % 1 1 49777
70 % 1 1 43560
50 % 1 1 37136
40 % 1 1 32706
30 % 1 1 27694

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures