Sequence Similarity Clusters for the Entities in PDB 1MU8

Entity #1 | Chains: A
THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 207 338 45
95 % 207 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 207 339 67
70 % 207 341 78
50 % 207 341 107
40 % 207 341 131
30 % 207 341 138
Entity #2 | Chains: B
THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 183 290 59
95 % 227 377 40 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 229 384 40
70 % 229 408 46
50 % 229 408 84
40 % 1151 1721 4
30 % 1237 1871 6
Entity #3 | Chains: C
HIRUDIN IIB protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures