Sequence Similarity Clusters for the Entities in PDB 1MTN

Entity #1 | Chains: A,E
ALPHA-CHYMOTRYPSIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,F
ALPHA-CHYMOTRYPSIN protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 38 840
95 % 34 38 1140 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 34 38 1164
70 % 36 40 1158
50 % 36 40 1196
40 % 38 42 1163
30 % 46 50 1001
Entity #3 | Chains: C,G
ALPHA-CHYMOTRYPSIN protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 38 841
95 % 34 38 1141 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 34 38 1166
70 % 36 40 1161
50 % 39 43 1129
40 % 48 52 991
30 % 48 52 969
Entity #4 | Chains: D,H
BASIC PANCREATIC TRYPSIN INHIBITOR protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 44 362
95 % 81 90 250
90 % 86 95 253
70 % 105 115 176
50 % 128 148 178
40 % 136 162 176
30 % 136 162 188

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1YPH 2 C, D CHYMOTRYPSIN A, chain B 9913 3.4.21.1 | Details
2 1GG6 2 B GAMMA CHYMOTRYPSIN 9913 3.4.21.1 | Details
3 1GGD 2 B GAMMA CHYMOTRYPSIN 9913 3.4.21.1 | Details
4 2P8O 2 B Chymotrypsin A chain B 9913 3.4.21.1 | Details
5 1GCT 2 B GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
6 3GCT 2 F GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
7 3RU4 4 D Chymotrypsinogen A 9913 3.4.21.1 | Details
8 1AB9 2 B GAMMA-CHYMOTRYPSIN 9913 3.4.21.1 | Details
9 3VGC 2 B GAMMA CHYMOTRYPSIN A-CHYMOTRYPSIN PURCHASED FROM SIGMA AND CONVERTED TO G-CHYMOTRYPSIN BY THE METHOD OF STODDARD ET AL., 1990, BIOCHEMISTRY, VOL. 29, P. 4871-4879 9913 3.4.21.1 | Details
10 1CHO 2 F ALPHA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
11 2GCT 2 B GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
12 3PO1 2 B Thrombin heavy chain 9606 3.4.21.5 | Details
13 1AFQ 2 B BOVINE GAMMA-CHYMOTRYPSIN 9913 3.4.21.1 | Details
14 2GMT 2 B GAMMA-CHYMOTRYPSIN 9913 3.4.21.1 | Details
15 7GCH 2 F GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
16 1AKS 1 A ALPHA TRYPSIN 9823 3.4.21.4 | Details
17 6CHA 2 B, F ALPHA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
18 1GHB 2 F GAMMA-CHYMOTRYPSIN 9913 3.4.21.1 | Details
19 2GCH 2 F GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
20 2VGC 2 B GAMMA CHYMOTRYPSIN A-CHYMOTRYPSIN PURCHASED FROM SIGMA AND CONVERTED TO G-CHYMOTRYPSIN BY THE METHOD OF STODDARD ET AL., 1990, BIOCHEMISTRY, VOL. 29, P. 4871-4879 9913 3.4.21.1 | Details
21 1VGC 2 B GAMMA CHYMOTRYPSIN A-CHYMOTRYPSIN PURCHASED FROM SIGMA AND CONVERTED TO G-CHYMOTRYPSIN BY THE METHOD OF STODDARD ET AL., 1990, BIOCHEMISTRY, VOL. 29, P. 4871-4879 9913 3.4.21.1 | Details
22 3GCH 2 B GAMMA-CHYMOTRYPSIN 9913 3.4.21.1 | Details
23 4GCH 2 F GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
24 6GCH 2 F GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
25 1N8O 2 B Chymotrypsin A, b chain 9913 3.4.21.1 | Details
26 1GHA 2 F GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
27 1GMH 2 F GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
28 1UCY 2 H THROMBIN CHYMOTRYPSINOGEN NUMBERING (RATHER THAN SEQUENTIAL) SYSTEM IS USED, BASED ON THE TOPOLOGICAL ALIGNMENT WITH THE STRUCTURE OF CHYMOTRYPSINOGEN (H.BRANDSTETTER ET AL., 1992, J.MOL.BIOL., V. 226, 1085). THE N-TERMINUS OF THE FIBRINOPEPTIDE IS ACETYLATED. FIBRINOPEPTIDE SEQUENCE NUMBERS ARE ACE 6 TO ARG 19. A NEW RESIDUE, OPR, HAS BEEN DEFINED FOR THE ARG/GLY COMBINATION IN WHICH THE AMIDE NITROGEN HAS BEEN REPLACED WITH A CH2, MAKING THE NORMAL AMIDE BOND BETWEEN THESE TWO RESIDUES A KETONE BOND. THE FIBRINOPEPTIDE NUMBERING IS CONSEQUENTLY INCREMENTED BY 1 AFTER THIS RESIDUE IN KEEPING WITH THE FIBRINOGEN NUMBERING SCHEME. THERE ARE ALTERNATE CONFORMATIONS FOR RESIDUES PRO 18 AND ARG 19 IN FIBRINOPEPTIDE III. 9913 3.4.21.5 | Details
29 4VGC 2 B GAMMA CHYMOTRYPSIN A-CHYMOTRYPSIN PURCHASED FROM SIGMA AND CONVERTED TO G-CHYMOTRYPSIN BY THE METHOD OF STODDARD ET AL., 1990, BIOCHEMISTRY, VOL. 29, P. 4871-4879 9913 3.4.21.1 | Details
30 1GMC 2 F GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
31 1GMD 2 F GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
32 1RIW 2 B thrombin heavy chain, B residues 37-183 9606 3.4.21.5 | Details
33 1UHB 1 A Trypsin 9823 3.4.21.4 | Details
34 1BBR 2 H EPSILON-THROMBIN 9913 3.4.21.5 | Details
35 1CA0 2 B, G BOVINE CHYMOTRYPSIN 9913 3.4.21.1 | Details
36 1BHX 2 B ALPHA THROMBIN 9606 3.4.21.5 | Details
37 1HJA 2 B ALPHA-CHYMOTRYPSIN 9913 3.4.21.1 | Details
38 1YCP 4 K EPSILON THROMBIN 9913 3.4.21.5 | Details
39 2PKS 2 B Thrombin heavy chain fragment Residues 364-510 9606 3.4.21.5 | Details
40 5GCH 2 F GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
41 3BG4 2 B Chymotrypsin A chain B 9913 3.4.21.1 | Details
42 1CBW 2 B, G BOVINE CHYMOTRYPSIN 9913 3.4.21.1 | Details
43 2JET 2 B CHYMOTRYPSINOGEN B CHAIN B RESIDUES 37-164 10116 3.4.21.1 | Details
44 1KDQ 1 A CHYMOTRYPSIN B, B CHAIN 10116 3.4.21.1 | Details
45 1VIT 4 F EPSILON THROMBIN 9913 3.4.21.5 | Details
46 1MTN 2 B, F ALPHA-CHYMOTRYPSIN 9913 3.4.21.1 | Details
47 8GCH 2 F GAMMA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
48 5CHA 2 B, F ALPHA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
49 4CHA 2 B, F ALPHA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details
50 2CHA 2 B, F ALPHA-CHYMOTRYPSIN A 9913 3.4.21.1 | Details