Sequence Similarity Clusters for the Entities in PDB 1MTN

Entity #1 | Chains: A,E
ALPHA-CHYMOTRYPSIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,F
ALPHA-CHYMOTRYPSIN protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 38 854
95 % 34 38 1161 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 34 38 1186
70 % 36 40 1172
50 % 36 40 1216
40 % 38 42 1178
30 % 46 50 1018
Entity #3 | Chains: C,G
ALPHA-CHYMOTRYPSIN protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 38 855
95 % 34 38 1162 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 34 38 1188
70 % 36 40 1175
50 % 39 43 1145
40 % 48 52 1005
30 % 48 52 987
Entity #4 | Chains: D,H
BASIC PANCREATIC TRYPSIN INHIBITOR protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 44 368
95 % 81 90 258
90 % 86 95 262
70 % 105 115 177
50 % 129 149 185
40 % 137 163 179
30 % 137 163 191

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures