Sequence Similarity Clusters for the Entities in PDB 1MT8

Entity #1 | Chains: A,B
PROTEASE RETROPEPSIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 47 390
95 % 53 60 292 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 564 656 3
70 % 585 680 5
50 % 599 706 5
40 % 609 716 8
30 % 611 718 11
Entity #2 | Chains: P
Capsid-p2 substrate peptide of HIV-1 Gag polyprotein protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures