Sequence Similarity Clusters for the Entities in PDB 1MSW

Entity #1 | Chains: T
Template DNA dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: N
Non-Template DNA dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: R
RNA message rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
DNA-directed RNA polymerase protein, length: 883 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 10 2334
95 % 1 13 2349
90 % 1 13 2389
70 % 1 13 2390
50 % 1 13 2383
40 % 1 13 2374
30 % 1 13 2230

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.