Sequence Similarity Clusters for the Entities in PDB 1MSW

Entity #1 | Chains: T
Template DNA dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: N
Non-Template DNA dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: R
RNA message rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
DNA-directed RNA polymerase protein, length: 883 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 2824
95 % 1 13 2831 Flexibility: High
Max RMSD: 19.2, Avg RMSD: 10.4
PDBFlex
90 % 1 13 2879
70 % 1 13 2853
50 % 1 13 2813
40 % 1 13 2763
30 % 1 13 2596

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures