Sequence Similarity Clusters for the Entities in PDB 1MSP

Entity #1 | Chains: A,B
MAJOR SPERM PROTEIN protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23411
95 % 4 4 4247 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 4 4279
70 % 5 5 3226
50 % 5 5 3146
40 % 5 5 3064
30 % 5 5 2876

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2BVU 1 A, B, C, D MAJOR SPERM PROTEIN, ISOFORM ALPHA 6253
2 2MSP 1 A, B, C, D, E, F, G, H MAJOR SPERM PROTEIN BETA ISOFORM 6253
3 3MSP 1 A, B MAJOR SPERM PROTEIN EXPRESSED MATERIAL LACKS THE N-TERMINAL ACETYL GROUP THAT IS PRESENT IN WILD-TYPE MSP 6253
4 1MSP 1 A, B MAJOR SPERM PROTEIN ALPHA ISOFORM, PH 4.6 6253