Sequence Similarity Clusters for the Entities in PDB 1MSP

Entity #1 | Chains: A,B
MAJOR SPERM PROTEIN protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 4244
95 % 4 4 4599 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 4 4640
70 % 5 5 3473
50 % 5 5 3379
40 % 5 5 3255
30 % 5 5 3001

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2BVU 1 A, B, C, D MAJOR SPERM PROTEIN, ISOFORM ALPHA 6253
2 1GRW 1 A, B, C, D MAJOR SPERM PROTEIN 31/40/142 6239
3 2MSP 1 A, B, C, D, E, F, G, H MAJOR SPERM PROTEIN BETA ISOFORM 6253
4 3MSP 1 A, B MAJOR SPERM PROTEIN EXPRESSED MATERIAL LACKS THE N-TERMINAL ACETYL GROUP THAT IS PRESENT IN WILD-TYPE MSP 6253
5 1MSP 1 A, B MAJOR SPERM PROTEIN ALPHA ISOFORM, PH 4.6 6253