Sequence Similarity Clusters for the Entities in PDB 1MSP

Entity #1 | Chains: A,B
MAJOR SPERM PROTEIN protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23854
95 % 4 4 4324 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 4 4353
70 % 5 5 3294
50 % 5 5 3203
40 % 5 5 3117
30 % 5 5 2922

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3MSP 1 A, B MAJOR SPERM PROTEIN EXPRESSED MATERIAL LACKS THE N-TERMINAL ACETYL GROUP THAT IS PRESENT IN WILD-TYPE MSP 6253
2 1MSP 1 A, B MAJOR SPERM PROTEIN ALPHA ISOFORM, PH 4.6 6253