Sequence Similarity Clusters for the Entities in PDB 1MSP

Entity #1 | Chains: A,B
MAJOR SPERM PROTEIN protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 4406
95 % 4 4 4762 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 4 4793
70 % 5 5 3565
50 % 5 5 3451
40 % 5 5 3317
30 % 5 5 3054

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures