Sequence Similarity Clusters for the Entities in PDB 1MSP

Entity #1 | Chains: A,B
MAJOR SPERM PROTEIN protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22591
95 % 4 4 4096 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 4 4123
70 % 5 5 3118
50 % 5 5 3042
40 % 5 5 2964
30 % 5 5 2778

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.