Sequence Similarity Clusters for the Entities in PDB 1MSB

Entity #1 | Chains: A,B
MANNOSE-BINDING PROTEIN-A protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14055
95 % 3 3 13230 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 3 3 13003
70 % 3 3 12216
50 % 16 16 1802
40 % 16 16 1788
30 % 16 16 1743

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures