Sequence Similarity Clusters for the Entities in PDB 1MS7

Entity #1 | Chains: A,B,C
Glutamate receptor subunit 2 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 73 111
95 % 92 157 62 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 105 180 61
70 % 105 180 71
50 % 164 272 36
40 % 164 273 48
30 % 178 289 58

Instructions

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5NG9 1 A Glutamate receptor 2 THE PROTEIN CRYSTALLIZED IS THE EXTRACELLULAR LIGAND-BINDING DOMIAN OF GLUA2. TRANSMEMBRANE REGIONS WERE REPLACED WITH A GLY-THR LINKER (118-119). SEQUENCE MATCHES DISCONTINUOUSLY WITH THE REFERENCE DATABASE (413-527, 653-797). RESIDUES 1-2 ARE CLONING REMNANTS. 10116
2 5JEI 1 A Glutamate receptor 2,Glutamate receptor 2 10116
3 4IGT 1 A Glutamate receptor 2 Ligand-binding domain, UNP RESIDUES 413-527, 653-796 10116
4 4YU0 1 A, B Glutamate receptor 2,Glutamate receptor 2 10116
5 5NIH 1 A, B Glutamate receptor 2 THE PROTEIN CRYSTALLIZED IS THE EXTRACELLULAR LIGAND-BINDING DOMIAN OF GLUA2. TRANSMEMBRANE REGIONS WERE REPLACED WITH A GLY-THR LINKER (118-119). SEQUENCE MATCHES DISCONTINUOUSLY WITH THE REFERENCE DATABASE (413-527, 653-797). RESIDUES 1-2 ARE CLONING REMNANTS. 10116
6 5FTI 1 A, B GLUTAMATE RECEPTOR 2 LIGAND BINDING DOMAIN, UNP RESIDUES 404-527,653-796 10116
7 3FAS 1 A, B Glutamate receptor 4 iGluR4 flip ligand-binding core (S1S2) 10116
8 5NS9 1 A, B Glutamate receptor 2,Glutamate receptor 2 M1-R29 --> expression-tag followed by thrombin cleavage site G294 is not resolved in the structure 10116
9 4FAT 1 A Glutamate receptor 2 ligand binding domain 10116
10 3TKD 1 A, B GLUTAMATE RECEPTOR 2 Ligand binding domain 10116
11 1MQI 1 A glutamate receptor 2 ligand binding core (S1S2J) 10116
12 4O3C 1 A Glutamate receptor 2 Ligand binding domain (unp residues 413-527 and unp residues 653-796) 10116
13 4U21 1 A, B Glutamate receptor 2,Glutamate receptor 2 10116
14 4Z0I 1 A, B Glutamate receptor 2,Glutamate receptor 2 10116
15 5FHM 1 A, B Glutamate receptor 2,Glutamate receptor 2 Protein crystallized is the extracellular ligand-binding domain of GluA2. Transmembrane regions genetically removed and replaced with Gly-Thr linker (residues 118-119). Protein consists of UNP residues 413-527 and 653-797, numbering with signal peptide of 21 residues. The first two residues (Gly, Ala) are cloning remnants. 10116
16 1MQD 1 A, B, C, D Glutamate receptor subunit 2 Tetherd dimer linked by GLY 115 and THR 116 GluR2-flop ligand-binding core (S1S2J) 10116
17 4U22 1 A Glutamate receptor 2 10116
18 4LZ5 1 A, B, C Glutamate receptor 2 SEE REMARK 999 10116
19 4U2R 1 A, B, C, D Glutamate receptor 2 10116
20 4U4X 1 A, B Glutamate receptor 2,Glutamate receptor 2 UNP residues 413-527, UNP residues 653-796 10116
21 1M5E 1 A, B, C Glutamate receptor 2 GluR2-flop ligand binding core (S1S2J) 10116
22 3H6W 1 A, B Glutamate receptor 2 iGluR2-flop ligand-binding core: UNP residues 413-796 10116
23 2XXH 1 A, B, C GLUTAMATE RECEPTOR 2 GLUA2FLOPS1-GLYTHR-S2 LIGAND BINDING DOMAIN, RESIDUES 413-527,653-796 10116
24 5FHN 1 A Glutamate receptor 2,Glutamate receptor 2 ligand-binding domain of GluA2. Transmembrane regions genetically removed and replaced with Gly-Thr linker (residues 118-119). Protein consists of UNP residues 413-527 and 653-797, numbering with signal peptide of 21 residues. The first two residues (Gly, Ala) are cloning remnants. 10116
25 2XX8 1 A, B, C GLUTAMATE RECEPTOR 2 GLUA2FLOPS1-GLYTHR-S2 LIGAND BINDING DOMAIN, RESIDUES 413-527,653-796 10116
26 3KGC 1 A, B Glutamate receptor 2 extracellular domains residues 414-527 and 653-795 10116
27 4IY6 1 A Glutamate receptor 2 Ligand binding domain, UNP RESIDUES 413-527, 653-796 10116
28 2XXI 1 A, B, C GLUTAMATE RECEPTOR 2 GLUA2FLOPS1-GLYTHR-S2 LIGAND BINDING DOMAIN, RESIDUES 413-527,653-796 10116
29 2GFE 1 A, B, C Glutamate receptor 2 10116
30 3DP6 1 A, B, C Glutamate receptor 2 S1S2 binding domain 10116
31 1P1O 1 A Glutamate receptor 2 ligand binding core (S1S2J) 10116
32 1M5C 1 A Glutamate receptor 2 flop ligand binding core (S1S2J) 10116
33 5H8S 1 A, B, C Glutamate receptor 2,Glutamate receptor 2 UNP residues 413-527, GT linker, UNP residues 653-796 9606
34 2AL5 1 A, B Glutamate receptor 2 ligand binding core (S1S2J) 10116
35 3RTF 1 B, D, F Glutamate receptor 2 SEE REMARK 999 10116
36 1MM7 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
37 4O3A 1 A, B, C Glutamate receptor 2 Ligand binding domain (unp residues 413-527 and unp residues 653-736) 10116
38 1WVJ 1 A ionotropic glutamate receptor 2 Flop ligand-binding core of GluR2(GluR2-S1S2J) 10116
39 1MQJ 1 A glutamate receptor 2 ligand binding core (S1S2J) 10116
40 3RN8 1 A, B, C Glutamate receptor 2 UNP residues 413-527, 653-812 9606
41 1M5D 1 A Glutamate receptor 2 flop ligand binding core (S1S2J-Y702F) 10116
42 3LSW 1 A GluA2 S1S2 domain 10116
43 1XHY 1 A Glutamate receptor GluR2 flop ligand-binding core (S1S2J), UNP residues 413-527 and 653-796 10116
44 1FTK 1 A GLUTAMATE RECEPTOR SUBUNIT 2 LIGAND BINDING CORE, S1S2I 10116
45 5CBS 1 A, B, C, D Glutamate receptor 2,Glutamate receptor 2 UNP residues 413-527,UNP residues 653-797 10116
46 4O3B 1 A, B Glutamate receptor 2 Ligand binding domain (unp residues 413-527 and unp residues 653-736) 10116
47 3RNN 1 A, B, C Glutamate receptor 2 UNP residues 413-527, 653-812 9606
48 4H8J 1 A, B, C, D Glutamate receptor 2 SEE REMARK 999 10116
49 1SYH 1 A Glutamate receptor 2 GLUR2-FLOP LIGAND-BINDING CORE (S1S2J) 10116
50 4F29 1 A Glutamate receptor 3 10116
51 2AL4 1 A, B, C, D, E, F Glutamate receptor 2 ligand binding core (S1S2J) 10116
52 4U23 1 A Glutamate receptor 2,Glutamate receptor 2 10116
53 4U1O 1 A Glutamate receptor 2 10116
54 3PMV 1 A Glutamate receptor 2 S1-S2 fusion in which Gly118 and Thr119 replace a membrane-spanning region Ligand binding domain, residues 413 to 527 and 653 to 796 10116
55 4U4S 1 A, B Glutamate receptor 2,Glutamate receptor 2 AMPA RECEPTOR LIGAND BINDING DOMAIN, GLUA2 S1S2J-L483Y-N754S, UNP RESIDUES 413-527 AND 653-796; CRYSTALLIZED WITH ALLOSTERIC MODULATOR BPAM-25. TRANSMEMBRANE REGIONS WERE GENETICALLY REMOVED AND REPLACED WITH A GLY-THR LINKER (118-119). THE FIRST TWO RESIDUES (GLY, ALA) ARE CLONING REMNANTS. UNP residues 413-527, UNP residues 653-796 10116
56 3O6G 1 A Glutamate receptor 2 S1-S2 fusion in which Gly118 and Thr119 replace a membrane-spanning region Ligand binding domain, UNP residues 413 to 527 and 653 to 796 10116
57 3B6W 1 A, B, C, D Glutamate receptor 2 10116
58 1MY3 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
59 3H6U 1 A Glutamate receptor 2 iGluR2-flop ligand-binding core: UNP residues 413-796 10116
60 4N07 1 A, B, C Glutamate receptor 2 unp residues 413-527, unp reisdues 653-796 10116
61 1MQH 1 A glutamate receptor 2 ligand binding core (S1S2J) 10116
62 1P1N 1 A Glutamate receptor 2 ligand binding core (S1S2J) 10116
63 5ELV 1 A, B Glutamate receptor 2,Glutamate receptor 2 THE PROTEIN COMPRISES SEGMENT S1 RESIDUES 413-527, A GT LINKER AND S2 RESIDUES 653-798. UNP residues, 413-527,UNP residue, 653-797 10116
64 3M3K 1 A, C, E Glutamate receptor 3 UNP residues 417-530, 658-799 10116
65 3O2A 1 A Glutamate receptor 2 S1-S2 fusion in which Gly118 and Thr119 replace a membrane-spanning region Ligand binding domain, UNP residues 413 to 527 and 653 to 796 10116
66 4F39 1 A Glutamate receptor 3 10116
67 4YMA 1 A, B Glutamate receptor 2 The protein comprises segment S1 residues 413-527, a GT linker and S2 residues 653-797. 10116
68 4X48 1 A, B, C Glutamate receptor 2 Ligand binding domain, engineered single chain 10116
69 2XHD 1 A, B GLUTAMATE RECEPTOR 2 THIS IS AN S1-S2 FUSION IN WHICH GLY 118 AND THR 119 REPLACE A MEMBRANE SPANNING REGION. LIGAND BINDING DOMAIN, RESIDUES 412-427 AND 653-796 9606
70 3M3L 1 A, D, G Glutamate receptor 2 UNP residues 414-527, 652-794 10116
71 3TZA 1 A, B Glutamate receptor 2,Glutamate receptor 2 The protein crystallized is the extracellular ligand-binding domian of GluA2. Transmembrane regions were genetically removed and replaced with a Gly-Thr linker. Ligand binding domain, UNP resiudes 413-527,UNP residues 653-796 10116
72 4F1Y 1 A, C Glutamate receptor 3 10116
73 3T96 1 B, D, F Glutamate receptor 2 SEE REMARK 999 10116
74 3FAT 1 A, B, C Glutamate receptor 4 iGluR4 flip ligand-binding core (S1S2) 10116
75 3EPE 1 A, B Glutamate receptor 4,Glutamate receptor ligand binding domain (UNP residues 416-528 and 654-958) 10116
76 3T9X 1 B, D, F Glutamate receptor 2 SEE REMARK 999 10116
77 4F3B 1 A Glutamate receptor 3 10116
78 4U1Z 1 A Glutamate receptor 2,Glutamate receptor 2 10116
79 3O6I 1 A Glutamate receptor 2 S1-S2 fusion in which Gly118 and Thr119 replace a membrane-spanning region Ligand binding domain, UNP residues 413 to 527 and 653 to 796 10116
80 4IY5 1 A, B Glutamate receptor 2 Ligand binding domain, UNP RESIDUES 413-527, 653-796 10116
81 1MXU 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
82 1M5B 1 A, B, C Glutamate receptor 2 flop ligand binding core (S1S2J) 10116
83 3LSF 1 B, E, H Glutamate receptor 2 10116
84 4LZ8 1 A, B, C Glutamate receptor 2 SEE REMARK 999 10116
85 1FTM 1 A, B, C GLUTAMATE RECEPTOR SUBUNIT 2 GLUR2-FLOP LIGAND BINDING CORE (S1S2J) 10116
86 3T93 1 B, D, F Glutamate receptor 2 SEE REMARK 999 10116
87 3UA8 1 A Glutamate receptor 2 SEE REMARK 999 9606
88 3TDJ 1 A, B Glutamate receptor 2 Ligand binding domain, UNP residues 413-527 and 653-796 10116
89 3T9U 1 A, B, C Glutamate receptor 2 SEE REMARK 999 10116
90 1NNP 1 A, B Glutamate receptor 2 GluR2-flop ligand-binding core (S1S2J) 10116
91 1NNK 1 A Glutamate receptor 2 GluR2-flop ligand-binding core (S1S2J) 10116
92 1LBC 1 A, B, C Glutamine Receptor 2 ligand binding core 10116
93 4F2O 1 A Glutamate receptor 3 10116
94 1MY2 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
95 3DLN 1 A Glutamate receptor 3 S1S2 binding domain 10116
96 3T9V 1 A, B Glutamate receptor 2 SEE REMARK 999 10116
97 3LSX 1 A GluA3 S1S2 domain 10116
98 3BKI 1 B, C, D, P Glutamate receptor 2 10116
99 1P1W 1 A, B Glutamate receptor 2 precursor ligand binding core (S1S2J) 10116
100 3KEI 1 A, B Glutamate receptor 4 ligand binding domain 10116
101 3O29 1 A Glutamate receptor 2 S1-S2 fusion in which Gly118 and Thr119 replace a membrane-spanning region Ligand binding domain, UNP residues 413 to 527 and 653 to 796 10116
102 2XX9 1 A, B, C GLUTAMATE RECEPTOR 2 GLUA2FLOPS1-GLYTHR-S2 LIGAND BINDING DOMAIN, RESIDUES 413-527,653-796 10116
103 4GXS 1 B, D Glutamate receptor 2 UNP Residues 652-794 10116
104 1M5F 1 A, B, C Glutamate receptor 2 flop ligand binding core (S1S2J-Y702F) 10116
105 1MS7 1 A, B, C Glutamate receptor subunit 2 GluR2-flop ligand-binding core (S1S2J) 10116
106 3O28 1 A Glutamate receptor 2 S1-S2 fusion in which Gly118 and Thr119 replace a membrane-spanning region Ligand binding domain, UNP residues 413 to 527 and 653 to 796 10116
107 3B6Q 1 A Glutamate receptor 2 10116
108 3PMX 1 A Glutamate receptor 2 S1-S2 fusion in which Gly118 and Thr119 replace a membrane-spanning region Ligand binding domain, residues 413 to 527 and 653 to 796 10116
109 1MY4 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
110 3BFU 1 A, B, C, D Glutamate receptor 2 residues 1-263 10116
111 5CBR 1 A Glutamate receptor 2,Glutamate receptor 2 10116
112 3IL1 1 B, E, H Glutamate receptor 2 S1S2 binding domain 10116
113 1FTL 1 A, B GLUTAMATE RECEPTOR SUBUNIT 2 LIGAND BINDING CORE (S1S2J) 10116
114 1GR2 1 A PROTEIN (GLUTAMATE RECEPTOR 2) LIGAND BINDING DOMAIN 10116
115 3ILU 1 B, E, H Glutamate receptor 2 S1S2 binding domain 10116
116 3T9H 1 B, D, F Glutamate receptor 2 SEE REMARK 999 10116
117 3H03 1 A, B, D, G Glutamate receptor 2 UNP residues 414-527, 652-794 10116
118 4Q30 1 B, D, F Glutamate receptor 2 CHIMERIC PROTEIN 10116
119 4G8M 1 A, B Glutamate receptor 2 UNP residues 413-527, 653-796 10116
120 1MXV 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
121 1MY1 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
122 3IJO 1 B, E, H Glutamate receptor 2 10116
123 1MXW 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
124 4F22 1 A Glutamate receptor 3 10116
125 1MY0 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
126 1MXZ 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
127 4F3G 1 A Glutamate receptor 3 10116
128 3PD9 1 A, B Glutamate receptor 2 UNP residues 413-527, 653-795 10116
129 2ANJ 1 A Glutamate receptor 2 Ligand Binding Core 10116
130 3H6V 1 A, B Glutamate receptor 2 iGluR2-flop ligand-binding core: UNP residues 413-796 10116
131 1MXY 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
132 2XX7 1 A, B, C GLUTAMATE RECEPTOR 2 GLUA2 FLOP ISOFORM S1-DOMAIN-GLYTHR-S2-DOMAIN LIGAND BINDING DOMAIN, RESIDUES 413-527,653-795 10116
133 1MXX 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
134 1N0T 1 A, B, C, D Glutamate receptor 2 GluR2-flop ligand-binding core (S1S2J). 10116
135 1MQG 1 A, B glutamate receptor 2 ligand binding core (S1S2J) 10116
136 4LZ7 1 A, B, C Glutamate receptor 2 SEE REMARK 999 10116
137 1P1Q 1 A, B, C Glutamate receptor 2 ligand binding core (S1S2J) 10116
138 5BUU 1 A, B Glutamate receptor 2,Glutamate receptor 2 Ligand-binding domain, UNP residues 392-506 and 632-775 connected by a GT linker (numbering without signal peptide) UNP residues 413-527,UNP residues 653-796 10116
139 3IK6 1 B, E, H Glutamate receptor 2 S1S2 binding domain 10116
140 3BBR 1 A, B Glutamate receptor 2 Ligand binding core 10116
141 1LBB 1 A Glutamine receptor 2 ligand binding core (flop) 10116
142 1MM6 1 A, B GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
143 3RTW 1 B, D, F Glutamate receptor 2 SEE REMARK 999 10116
144 1SYI 1 A, B Glutamate receptor 2 GLUR2-FLOP LIGAND-BINDING CORE (S1S2J) 10116
145 3R7X 1 A, B Glutamate receptor 2 SEE REMARK 999 9606
146 3LSL 1 A, D, G Glutamate receptor 2 10116
147 3B6T 1 A Glutamate receptor 2 10116
148 3KFM 1 A Glutamate receptor 4 ligand binding domain 10116
149 2AIX 1 A Glutamate receptor 2 GLUR2-FLOP LIGAND-BINDING CORE (S1S2J). 10116
150 3ILT 1 B, E, H Glutamate receptor 2 S1S2 binding domain 10116
151 3H6T 1 A, B, C Glutamate receptor 2 iGluR2-flop ligand-binding core: UNP residues 413-796 10116
152 1P1U 1 A, B Glutamate receptor 2 ligand binding core (S1S2J) 10116
153 5FHO 1 A, B, C, D Glutamate receptor 2,Glutamate receptor 2 Protein crystallized is the extracellular ligand-binding domain of GluA2. Transmembrane regions genetically removed and replaced with Gly-Thr linker (residues 118-119). Protein consists of UNP residues 413-527 and 653-797, numbering with signal peptide of 21 residues. The first two residues (Gly, Ala) are cloning remnants. 10116
154 3DP4 1 A Glutamate receptor 3 S1S2 binding domain 10116
155 3O6H 1 A Glutamate receptor 2 S1-S2 fusion in which Gly118 and Thr119 replace a membrane-spanning region Ligand binding domain, UNP residues 413 to 527 and 653 to 796 10116
156 4F2Q 1 A Glutamate receptor 3 10116
157 3EN3 1 A Glutamate receptor 4,Glutamate receptor ligand binding domain (UNP residues 416-528 and 654-958) 10116
158 1FTO 1 A, B GLUTAMATE RECEPTOR SUBUNIT 2 LIGAND BINDING CORE (S1S2J) 10116
159 1FTJ 1 A, B, C GLUTAMATE RECEPTOR SUBUNIT 2 LIGAND BINDING CORE (S1S2J)) 10116
160 4ISU 1 A, B, C, D Glutamate receptor 2 Ligand-binding domain 10116
161 4F31 1 B, D Glutamate receptor 3 10116
162 1FW0 1 A GLUTAMATE RECEPTOR SUBUNIT 2 LIGAND BINDING CORE (S1S2J) 10116
163 2UXA 1 A, B, C GLUTAMATE RECEPTOR SUBUNIT GLUR2-FLIP LIGAND BINDING CORE, RESIDUES 412-527,653-795 10116
164 3BFT 1 A, B, C Glutamate receptor 2 residues 1-263 10116
165 2P2A 1 A, B Glutamate receptor 2 GluR2-Flop ligand-binding core (Residues 413-527, 653-796) 10116
166 3PMW 1 A Glutamate receptor 2 S1-S2 fusion in which Gly118 and Thr119 replace a membrane-spanning region Ligand binding domain, residues 413 to 527 and 653 to 796 10116
167 3PD8 1 A, B, C Glutamate receptor 2 UNP residues 413-527, 653-795 10116
168 1LB8 1 A, B Glutamate receptor 2 ligand-binding core (flop) 10116
169 1LB9 1 A, B Glutamate receptor 2 ligand binding core (flop) 10116
170 3M3F 1 A Glutamate receptor 3 UNP residues 417-530, 658-799 10116
171 2I3W 1 A, B GLUTAMATE RECEPTOR SUBUNIT 2 LIGAND BINDING CORE (S1S2J) 10116
172 3RT8 1 A Glutamate receptor 3 SEE REMARK 999 10116
173 2I3V 1 A, B, C, D Glutamate receptor 2 LIGAND BINDING CORE (S1S2J) 10116
174 2CMO 1 A, B GLUTAMATE RECEPTOR 2 RESIDUES 413-527,653-796 10116
175 4L17 1 A, C, E, G Glutamate receptor 2 Ligand binding domain (UNP residues 413-527, 653-796) 10116
176 3IJX 1 B, D, H Glutamate receptor 2 10116
177 3RT6 1 B Glutamate receptor 3 SEE REMARK 999 10116
178 3B7D 1 A, B, C, D, E, F, G, H Glutamate receptor 2 10116
179 3H06 1 B, E, G, H, J, L, N, P Glutamate receptor 2 UNP residues 414-527, 652-794 10116
180 5FTH 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING DOMAIN, UNP RESIDUES 404-527,653-796 10116