Sequence Similarity Clusters for the Entities in PDB 1MRD

Entity #1 | Chains: L
IGG2B-KAPPA JEL103 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 8363
95 % 68 147 153 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 77 162 147
70 % 955 2553 1
50 % 1957 5180 1
40 % 2259 5834 1
30 % 2754 7269 1
Entity #2 | Chains: H
IGG2B-KAPPA JEL103 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 22998
95 % 2 4 20534 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 7 11134
70 % 945 2511 2
50 % 1958 5180 1
40 % 2260 5834 1
30 % 2755 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures