Sequence Similarity Clusters for the Entities in PDB 1MRC

Entity #1 | Chains: L
IGG2B-KAPPA JEL103 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 21595
95 % 80 146 149 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 87 156 149
70 % 989 2416 1
50 % 2023 4892 1
40 % 2023 4892 1
30 % 2286 5759 1
Entity #2 | Chains: H
IGG2B-KAPPA JEL103 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 21747
95 % 4 4 18855 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 5 14361
70 % 977 2366 2
50 % 2024 4892 1
40 % 2024 4892 1
30 % 2287 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures