Sequence Similarity Clusters for the Entities in PDB 1MRC

Entity #1 | Chains: L
IGG2B-KAPPA JEL103 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 8350
95 % 77 147 153 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 87 162 146
70 % 1039 2538 1
50 % 2131 5152 1
40 % 2452 5806 1
30 % 2992 7240 1
Entity #2 | Chains: H
IGG2B-KAPPA JEL103 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 22953
95 % 4 4 20508 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 7 11113
70 % 1030 2497 2
50 % 2132 5152 1
40 % 2453 5806 1
30 % 2993 7240 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures