Sequence Similarity Clusters for the Entities in PDB 1MRC

Entity #1 | Chains: L
IGG2B-KAPPA JEL103 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 21978
95 % 80 148 151 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 87 158 148
70 % 1023 2479 1
50 % 2093 5021 1
40 % 2093 5021 1
30 % 2395 5951 1
Entity #2 | Chains: H
IGG2B-KAPPA JEL103 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 22137
95 % 4 4 19167 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 5 14611
70 % 1011 2429 2
50 % 2094 5021 1
40 % 2094 5021 1
30 % 2396 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures