Sequence Similarity Clusters for the Entities in PDB 1MR1

Entity #1 | Chains: A,B
Mothers against decapentaplegic homolog 4 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 9022
95 % 5 5 9276 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 5 5 9184
70 % 5 5 8812
50 % 5 5 7997
40 % 5 5 7361
30 % 5 5 6497
Entity #2 | Chains: C,D
Ski oncogene protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48129
95 % 1 1 35919
90 % 1 1 34290
70 % 1 1 30474
50 % 1 1 26001
40 % 1 1 22910
30 % 1 1 19384

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures