Sequence Similarity Clusters for the Entities in PDB 1MR1

Entity #1 | Chains: A,B
Mothers against decapentaplegic homolog 4 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 9280
95 % 7 7 4943 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 7 7 4981
70 % 7 7 4850
50 % 7 7 4635
40 % 16 17 1939
30 % 16 17 1851
Entity #2 | Chains: C,D
Ski oncogene protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43506
95 % 1 1 36417 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 1 34769
70 % 1 1 30918
50 % 1 1 22513
40 % 1 1 19003
30 % 1 1 15912

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures