Sequence Similarity Clusters for the Entities in PDB 1MR1

Entity #1 | Chains: A,B
Mothers against decapentaplegic homolog 4 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 9182
95 % 5 5 9414 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 5 5 9321
70 % 5 5 8931
50 % 5 5 8102
40 % 5 5 7454
30 % 5 5 6577
Entity #2 | Chains: C,D
Ski oncogene protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48693
95 % 1 1 36331
90 % 1 1 34670
70 % 1 1 30800
50 % 1 1 26267
40 % 1 1 23148
30 % 1 1 19589

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures