Sequence Similarity Clusters for the Entities in PDB 1MQT

Entity #1 | Chains: A
Polyprotein protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56036
95 % 1 1 39988
90 % 2 2 27652
70 % 2 6 11034
50 % 4 14 4382
40 % 74 155 276
30 % 74 155 284
Entity #2 | Chains: B
Polyprotein Capsid Protein protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56954
95 % 2 2 29134
90 % 2 2 28123
70 % 4 15 4297
50 % 69 157 298
40 % 69 157 313
30 % 86 192 165
Entity #3 | Chains: C
Polyprotein Capsid Protein protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58159
95 % 2 2 29721
90 % 2 2 28684
70 % 4 15 4307
50 % 74 164 242
40 % 74 166 260
30 % 92 205 146
Entity #4 | Chains: D
Polyprotein Capsid Protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71272
95 % 2 2 35682
90 % 4 12 6049
70 % 32 87 554
50 % 61 122 427
40 % 62 123 454
30 % 62 123 453

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.