Sequence Similarity Clusters for the Entities in PDB 1MQT

Entity #1 | Chains: A
Polyprotein protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57556
95 % 1 1 41064
90 % 2 2 28414
70 % 2 6 11327
50 % 4 14 4509
40 % 73 160 277
30 % 73 160 287
Entity #2 | Chains: B
Polyprotein Capsid Protein protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58499
95 % 2 2 29946 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 2 28895
70 % 4 15 4418
50 % 68 160 315
40 % 68 160 329
30 % 85 195 167
Entity #3 | Chains: C
Polyprotein Capsid Protein protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59728
95 % 2 2 30548
90 % 2 2 29472
70 % 4 15 4429
50 % 73 169 244
40 % 73 171 260
30 % 91 210 149
Entity #4 | Chains: D
Polyprotein Capsid Protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73157
95 % 2 2 36623
90 % 4 12 6238
70 % 32 87 576
50 % 60 122 441
40 % 61 123 466
30 % 61 123 462

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures