Sequence Similarity Clusters for the Entities in PDB 1MQT

Entity #1 | Chains: A
Polyprotein protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52185
95 % 1 1 37182
90 % 2 2 25660
70 % 2 6 10207
50 % 4 14 4056
40 % 73 147 267
30 % 73 147 273
Entity #2 | Chains: B
Polyprotein Capsid Protein protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53056
95 % 2 2 27027
90 % 2 2 26114
70 % 4 15 3955
50 % 68 150 280
40 % 68 150 298
30 % 84 178 162
Entity #3 | Chains: C
Polyprotein Capsid Protein protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54183
95 % 2 2 27575
90 % 2 2 26641
70 % 4 15 3965
50 % 45 114 398
40 % 73 158 251
30 % 89 187 148
Entity #4 | Chains: D
Polyprotein Capsid Protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66721
95 % 2 2 33127
90 % 4 12 5576
70 % 32 82 500
50 % 60 116 386
40 % 60 116 425
30 % 60 116 417

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.