Sequence Similarity Clusters for the Entities in PDB 1MQT

Entity #1 | Chains: A
Polyprotein protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54053
95 % 1 1 38530
90 % 2 2 26627
70 % 2 6 10554
50 % 4 14 4203
40 % 73 148 281
30 % 73 148 285
Entity #2 | Chains: B
Polyprotein Capsid Protein protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54942
95 % 2 2 28049
90 % 2 2 27091
70 % 4 15 4109
50 % 68 150 299
40 % 68 150 316
30 % 84 178 170
Entity #3 | Chains: C
Polyprotein Capsid Protein protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56117
95 % 2 2 28616
90 % 2 2 27636
70 % 4 15 4118
50 % 45 114 432
40 % 73 159 262
30 % 90 189 152
Entity #4 | Chains: D
Polyprotein Capsid Protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68905
95 % 2 2 34369
90 % 4 12 5790
70 % 32 82 571
50 % 60 116 429
40 % 60 116 467
30 % 60 116 457

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.