Sequence Similarity Clusters for the Entities in PDB 1MQT

Entity #1 | Chains: A
Polyprotein protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55299
95 % 1 1 39462
90 % 2 2 27246
70 % 2 6 10821
50 % 4 14 4312
40 % 74 155 275
30 % 74 155 282
Entity #2 | Chains: B
Polyprotein Capsid Protein protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56202
95 % 2 2 28705 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 2 27717
70 % 4 15 4217
50 % 69 157 294
40 % 69 157 307
30 % 86 192 164
Entity #3 | Chains: C
Polyprotein Capsid Protein protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57391
95 % 2 2 29291 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 2 28277
70 % 4 15 4227
50 % 74 164 241
40 % 74 166 257
30 % 92 203 147
Entity #4 | Chains: D
Polyprotein Capsid Protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 70263
95 % 2 2 35212 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 4 12 5950
70 % 32 87 548
50 % 61 122 421
40 % 62 123 446
30 % 62 123 445

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.