Sequence Similarity Clusters for the Entities in PDB 1MQT

Entity #1 | Chains: A
Polyprotein protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58626
95 % 1 1 41787
90 % 2 2 28922
70 % 2 6 11567
50 % 4 14 4604
40 % 73 160 279
30 % 73 160 293
Entity #2 | Chains: B
Polyprotein Capsid Protein protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59584
95 % 2 2 30492 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 2 29404
70 % 4 15 4519
50 % 68 160 338
40 % 68 160 353
30 % 86 195 169
Entity #3 | Chains: C
Polyprotein Capsid Protein protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60846
95 % 2 2 31106
90 % 2 2 29990
70 % 4 15 4529
50 % 73 169 247
40 % 73 171 262
30 % 92 210 153
Entity #4 | Chains: D
Polyprotein Capsid Protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74455
95 % 2 2 37265
90 % 4 12 6370
70 % 32 87 591
50 % 60 122 452
40 % 61 123 477
30 % 61 123 470

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures