Sequence Similarity Clusters for the Entities in PDB 1MQT

Entity #1 | Chains: A
Polyprotein protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56760
95 % 1 1 40503
90 % 2 2 28014
70 % 2 6 11168
50 % 4 14 4438
40 % 73 159 276
30 % 73 159 285
Entity #2 | Chains: B
Polyprotein Capsid Protein protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57689
95 % 2 2 29516 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 2 28489
70 % 4 15 4360
50 % 68 159 303
40 % 68 159 315
30 % 85 194 165
Entity #3 | Chains: C
Polyprotein Capsid Protein protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58913
95 % 2 2 30111
90 % 2 2 29059
70 % 4 15 4370
50 % 73 168 240
40 % 73 170 258
30 % 91 209 148
Entity #4 | Chains: D
Polyprotein Capsid Protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72212
95 % 2 2 36112
90 % 4 12 6151
70 % 32 87 565
50 % 60 122 435
40 % 61 123 463
30 % 61 123 460

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.