Sequence Similarity Clusters for the Entities in PDB 1MQS

Entity #1 | Chains: A
Sly1 Protein protein, length: 671 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52060
95 % 1 1 38676
90 % 1 1 36903
70 % 1 1 32826
50 % 1 1 28100
40 % 1 1 24882
30 % 1 1 21217
Entity #2 | Chains: B
Integral Membrane Protein SED5 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75519
95 % 1 1 52392
90 % 1 1 49650
70 % 1 1 43510
50 % 1 1 37084
40 % 1 1 32637
30 % 1 1 27579

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures