Sequence Similarity Clusters for the Entities in PDB 1MQS

Entity #1 | Chains: A
Sly1 Protein protein, length: 671 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64828
95 % 1 1 52594
90 % 1 1 49858
70 % 1 1 34653
50 % 1 1 29446
40 % 1 1 32691
30 % 1 1 21507
Entity #2 | Chains: B
Integral Membrane Protein SED5 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65637
95 % 1 1 53182
90 % 1 1 39194
70 % 1 1 34654
50 % 1 1 29447
40 % 1 1 25808
30 % 1 1 21508

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures