Sequence Similarity Clusters for the Entities in PDB 1MQN

Entity #1 | Chains: A,D,G
Hemagglutinin HA1 chain protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 7003
95 % 41 47 258 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.6
PDBFlex
90 % 41 47 273
70 % 62 71 187
50 % 73 82 206
40 % 297 321 16
30 % 304 328 25
Entity #2 | Chains: B,E,H
Hemagglutinin HA2 chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 7157
95 % 3 3 7726 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 3 3 7682
70 % 3 3 7476
50 % 4 5 4180
40 % 4 5 3996
30 % 4 5 3685

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.