Sequence Similarity Clusters for the Entities in PDB 1MQN

Entity #1 | Chains: A,D,G
Hemagglutinin HA1 chain protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 7221
95 % 41 47 270 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.6
PDBFlex
90 % 41 47 284
70 % 62 71 203
50 % 73 82 217
40 % 304 330 17
30 % 312 338 27
Entity #2 | Chains: B,E,H
Hemagglutinin HA2 chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 7384
95 % 3 3 7947 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 3 3 7890
70 % 3 3 7662
50 % 4 5 4294
40 % 4 5 4101
30 % 4 5 3781

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures