Sequence Similarity Clusters for the Entities in PDB 1MQM

Entity #1 | Chains: A,D,G
Hemagglutinin HA1 chain protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 7182
95 % 31 47 270 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.6
PDBFlex
90 % 31 47 284
70 % 50 71 201
50 % 61 82 216
40 % 250 330 17
30 % 256 337 27
Entity #2 | Chains: B,E,H
Hemagglutinin HA2 chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 7342
95 % 1 3 7909 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 3 7855
70 % 1 3 7627
50 % 1 5 4268
40 % 1 5 4075
30 % 1 5 3758

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures