Sequence Similarity Clusters for the Entities in PDB 1MQL

Entity #1 | Chains: A,D,G
Hemagglutinin HA1 chain protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 6768
95 % 31 38 321 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.6
PDBFlex
90 % 31 38 340
70 % 45 55 267
50 % 47 57 290
40 % 261 289 17
30 % 268 296 26
Entity #2 | Chains: B,E,H
Hemagglutinin HA2 chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 6919
95 % 2 3 7455 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 3 7417
70 % 2 3 7206
50 % 3 5 4049
40 % 3 5 3874
30 % 3 5 3566

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.