Sequence Similarity Clusters for the Entities in PDB 1MQL

Entity #1 | Chains: A,D,G
Hemagglutinin HA1 chain protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 8496
95 % 43 50 263 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 43 50 275
70 % 70 80 189
50 % 81 91 214
40 % 313 345 16
30 % 321 353 29
Entity #2 | Chains: B,E,H
Hemagglutinin HA2 chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 8477
95 % 2 3 8522 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 3 8453
70 % 2 3 8145
50 % 5 8 2373
40 % 5 8 2342
30 % 5 8 2199

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures