Sequence Similarity Clusters for the Entities in PDB 1MQK

Entity #1 | Chains: L
antibody 7E2 FV fragment, light chain protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 15727
95 % 1 5 14757 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 9 4864
70 % 3 191 72
50 % 5 305 21
40 % 16 916 5
30 % 19 1042 7
Entity #2 | Chains: H
antibody 7E2 FV fragment, heavy chain protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 15674
95 % 1 5 14699 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 1 5 14430
70 % 10 372 9
50 % 12 566 7
40 % 17 916 5
30 % 20 1042 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.