Sequence Similarity Clusters for the Entities in PDB 1MQK

Entity #1 | Chains: L
antibody 7E2 FV fragment, light chain protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 15922
95 % 1 5 14922 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 9 4940
70 % 3 191 72
50 % 5 308 21
40 % 16 931 5
30 % 20 1059 7
Entity #2 | Chains: H
antibody 7E2 FV fragment, heavy chain protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 15870
95 % 1 5 14863 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 1 5 14594
70 % 10 381 9
50 % 12 578 7
40 % 17 931 5
30 % 21 1059 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.