Sequence Similarity Clusters for the Entities in PDB 1MQK

Entity #1 | Chains: L
antibody 7E2 FV fragment, light chain protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 15505
95 % 1 5 14541 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 9 4789
70 % 3 188 71
50 % 5 302 22
40 % 14 887 5
30 % 17 1013 7
Entity #2 | Chains: H
antibody 7E2 FV fragment, heavy chain protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 15454
95 % 1 5 14486
90 % 1 5 14212
70 % 9 350 9
50 % 10 540 8
40 % 15 887 5
30 % 18 1013 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.