Sequence Similarity Clusters for the Entities in PDB 1MQK

Entity #1 | Chains: L
antibody 7E2 FV fragment, light chain protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 16251
95 % 1 5 15187 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 9 5042
70 % 3 192 74
50 % 5 309 23
40 % 16 948 5
30 % 20 1077 7
Entity #2 | Chains: H
antibody 7E2 FV fragment, heavy chain protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 16198
95 % 1 5 15128 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 1 5 14857
70 % 10 397 9
50 % 12 594 7
40 % 17 948 5
30 % 21 1077 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures