Sequence Similarity Clusters for the Entities in PDB 1MQ8

Entity #1 | Chains: A,C
intercellular adhesion molecule-1 protein, length: 291 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37105
95 % 1 1 29026 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 28007
70 % 1 1 25276
50 % 1 1 21667
40 % 1 1 19119
30 % 1 1 16256
Entity #2 | Chains: B,D
Integrin alpha-L protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28423
95 % 27 29 800 Flexibility: Low
Max RMSD: 9.3, Avg RMSD: 1.9
PDBFlex
90 % 27 29 828
70 % 27 29 865
50 % 27 29 919
40 % 27 29 946
30 % 55 58 479

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures