Sequence Similarity Clusters for the Entities in PDB 1MQ8

Entity #1 | Chains: A,C
intercellular adhesion molecule-1 protein, length: 291 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38241
95 % 1 1 29856 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 28799
70 % 1 1 25968
50 % 1 1 22229
40 % 1 1 19605
30 % 1 1 16659
Entity #2 | Chains: B,D
Integrin alpha-L protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29329
95 % 27 29 824 Flexibility: Low
Max RMSD: 9.3, Avg RMSD: 1.9
PDBFlex
90 % 27 29 855
70 % 27 29 894
50 % 27 29 937
40 % 27 29 965
30 % 55 58 489

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures