Sequence Similarity Clusters for the Entities in PDB 1MQ8

Entity #1 | Chains: A,C
intercellular adhesion molecule-1 protein, length: 291 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37731
95 % 1 1 29460 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 28420
70 % 1 1 25639
50 % 1 1 21964
40 % 1 1 19375
30 % 1 1 16462
Entity #2 | Chains: B,D
Integrin alpha-L protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28930
95 % 27 29 817 Flexibility: Low
Max RMSD: 9.3, Avg RMSD: 1.9
PDBFlex
90 % 27 29 847
70 % 27 29 884
50 % 27 29 930
40 % 27 29 959
30 % 55 58 483

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures