Sequence Similarity Clusters for the Entities in PDB 1MQ8

Entity #1 | Chains: A,C
intercellular adhesion molecule-1 protein, length: 291 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36653
95 % 1 1 28681 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 27684
70 % 1 1 25008
50 % 1 1 21444
40 % 1 1 18926
30 % 1 1 16094
Entity #2 | Chains: B,D
Integrin alpha-L protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28085
95 % 27 29 784 Flexibility: Low
Max RMSD: 9.3, Avg RMSD: 2.0
PDBFlex
90 % 27 29 812
70 % 27 29 854
50 % 27 29 909
40 % 27 29 932
30 % 55 58 469

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.