Sequence Similarity Clusters for the Entities in PDB 1MQ8

Entity #1 | Chains: A,C
intercellular adhesion molecule-1 protein, length: 291 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36050
95 % 1 1 28186 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 27219
70 % 1 1 24665
50 % 1 1 21187
40 % 1 1 18697
30 % 1 1 15898
Entity #2 | Chains: B,D
Integrin alpha-L protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27587
95 % 27 29 782 Flexibility: Low
Max RMSD: 9.3, Avg RMSD: 2.0
PDBFlex
90 % 27 29 810
70 % 27 29 852
50 % 27 29 896
40 % 27 29 921
30 % 55 58 465

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.