1MQ6

Crystal Structure of 3-chloro-N-[4-chloro-2-[[(5-chloro-2-pyridinyl)amino]carbonyl]-6-methoxyphenyl]-4-[[(4,5-dihydro-2-oxazolyl)methylamino]methyl]-2-thiophenecarboxamide Complexed with Human Factor Xa


Sequence Similarity Clusters for the Entities in PDB 1MQ6

Entity #1 | Chains: A
COAGULATION FACTOR X HEAVY CHAIN protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 136 209
95 % 60 136 268 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 60 136 279
70 % 60 137 320
50 % 556 710 14
40 % 1279 1885 4
30 % 1286 1899 7
Entity #2 | Chains: L
COAGULATION FACTOR X LIGHT CHAIN protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 68 555
95 % 33 68 691 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.7
PDBFlex
90 % 33 68 717
70 % 33 68 764
50 % 33 69 806
40 % 68 120 489
30 % 99 154 387

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2Y5F 2 L FACTOR X LIGHT CHAIN RESIDUES 127-180 9606 3.4.21.6 | Details
2 2Y5G 2 L FACTOR X LIGHT CHAIN RESIDUES 127-180 9606 3.4.21.6 | Details
3 5JB9 1 E Coagulation factor IX Fragment: EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
4 2JKH 2 L FACTOR X LIGHT CHAIN EGF2, RESIDUES 126-180 9606 3.4.21.6 | Details
5 2Y5H 2 L FACTOR X LIGHT CHAIN RESIDUES 127-180 9606 3.4.21.6 | Details
6 5TNT 2 B Coagulation factor IX UNP residues 131-191 9606 3.4.21.22 | Details
7 4YZU 2 B Coagulation factor IX EGF-like 2 domain (UNP residues 131-191) 9606 3.4.21.22 | Details
8 4Z0K 2 B Coagulation factor IX EGF-like 2 domain (UNP residues 131-191) 9606 3.4.21.22 | Details
9 5JBA 1 E Coagulation factor IX Fragment: EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
10 5JB8 1 E Coagulation factor IX Fragment: EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
11 5TNO 2 B Coagulation factor IX UNP residues 131-191 9606 3.4.21.22 | Details
12 3KL6 2 B Coagulation Factor X light chain Factor X light chain residues 126-179 9606 3.4.21.6 | Details
13 5JBB 1 E Coagulation factor IX Fragment: EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
14 4JZE 2 L Factor VIIa (Light Chain) UNP residues 150-204 9606 3.4.21.21 | Details
15 2BZ6 2 L BLOOD COAGULATION FACTOR VIIA FACTOR VII LIGHT CHAIN, RESIDUES 150-202 9606 3.4.21.21 | Details
16 3FFG 2 L Coagulation factor X, light chain sequence database residues 127-178 9606 3.4.21.6 | Details
17 2VWO 2 L FACTOR X LIGHT CHAIN EGF2, RESIDUES 126-180 9606 3.4.21.6 | Details
18 2VWN 2 L FACTOR X LIGHT CHAIN EGF2, RESIDUES 126-180 9606 3.4.21.6 | Details
19 2WPH 1 E COAGULATION FACTOR IXA LIGHT CHAIN EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
20 2P3U 1 A Coagulation factor X EGF-like 2 domain 9606 3.4.21.6 | Details
21 2WPJ 1 E COAGULATION FACTOR IXA LIGHT CHAIN EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
22 2PR3 2 B COAGULATION FACTOR X, LIGHT CHAIN LIGHT CHAIN 9606 3.4.21.6 | Details
23 2XBV 2 L FACTOR X LIGHT CHAIN LIGHTCHAIN, RESIDUES 126-180 9606 3.4.21.6 | Details
24 2BOK 2 L COAGULATION FACTOR X EGF2 DOMAIN, RESIDUES 126-180 9606 3.4.21.6 | Details
25 2XC5 2 L FACTOR X LIGHT CHAIN LIGHTCHAIN, RESIDUES 126-180 9606 3.4.21.6 | Details
26 5L30 2 L Coagulation factor VII (Light Chain) 9606 3.4.21.21 | Details
27 5EGM 2 B Coagulation factor IX UNP residues 131-191 9606 3.4.21.22 | Details
28 2XC4 2 L FACTOR X LIGHT CHAIN LIGHT CHAIN, RESIDUES 126-180 9606 3.4.21.6 | Details
29 2XBW 2 L FACTOR X LIGHT CHAIN LIGHT CHAIN, RESIDUES 126-180 9606 3.4.21.6 | Details
30 2VVV 2 L FACTOR X LIGHT CHAIN EGF2, RESIDUES 126-180 9606 3.4.21.6 | Details
31 4ZAE 2 B Coagulation factor IX EG-like 2 domain (UNP residues 131-191) 9606 3.4.21.22 | Details
32 1W7X 2 L BLOOD COAGULATION FACTOR VIIA FACTOR VII LIGHT CHAIN, RESIDUES 151-204 9606 3.4.21.21 | Details
33 3KCG 1 L Coagulation factor IXa light chain EGF2 9606 3.4.21.22 | Details
34 4JYU 2 L Factor VII heavy chain 9606 3.4.21.21 | Details
35 5L2Y 2 L Coagulation factor VII (Light Chain) 9606 3.4.21.21 | Details
36 5L2Z 2 L Coagulation factor VII (Light Chain) 9606 3.4.21.21 | Details
37 3CEN 2 L COAGULATION FACTOR X, LIGHT CHAIN UNP residues 127-178 9606 3.4.21.6 | Details
38 4JZF 2 L Factor VIIa (Light Chain) UNP residues 150-204 9606 3.4.21.21 | Details
39 2VWL 2 L FACTOR X LIGHT CHAIN EGF2, RESIDUES 126-180 9606 3.4.21.6 | Details
40 5JBC 1 E Coagulation factor IX Fragment: EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
41 5TQF 2 L Factor VIIa (Light Chain) 9606 3.4.21.21 | Details
42 4ISH 2 L Factor VII light chain UNP residues 150-204 9606 3.4.21.21 | Details
43 3IIT 2 B Factor X light chain UNP RESIDUES 125-178 9606 3.4.21.6 | Details
44 3TK6 2 B Factor X light chain UNP RESIDUES 125-178 9606 3.4.21.6 | Details
45 2XBX 2 L FACTOR X LIGHT CHAIN LIGHTCHAIN, RESIDUES 126-180 9606 3.4.21.6 | Details
46 5TQG 2 L Factor VIIa (Light Chain) 9606 3.4.21.21 | Details
47 5TQE 2 L Factor VIIa (Light Chain) 9606 3.4.21.21 | Details
48 1Z6E 2 L Coagulation factor X UNP residues 127-178 9606 3.4.21.6 | Details
49 2P3T 1 A Coagulation factor X EGF-like 2 domain 9606 3.4.21.6 | Details
50 3LC3 2 B, D Coagulation factor IX residues 133-188 9606 3.4.21.22 | Details
51 1FJS 2 L COAGULATION FACTOR XA LIGHT CHAIN, EPIDERMAL GROWTH FACTOR LIKE DOMAIN 9606 3.4.21.6 | Details
52 2WPL 1 E COAGULATION FACTOR IXA LIGHT CHAIN EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
53 2VVC 2 K, L FACTOR X LIGHT CHAIN EGF2, RESIDUES 126-180 9606 3.4.21.6 | Details
54 2VWM 2 K, L FACTOR X LIGHT CHAIN EGF2, RESIDUES 126-180 9606 3.4.21.6 | Details
55 4ISI 2 L Factor VII light chain UNP residues 150-204 9606 3.4.21.21 | Details
56 4YT6 2 L Coagulation factor VII (light chain) UNP residues 148-204 9606 3.4.21.21 | Details
57 2W3I 2 B COAGULATION FACTOR X, LIGHT CHAIN LIGHT CHAIN, RESIDUES 128-178 9606 3.4.21.6 | Details
58 2XC0 2 L FACTOR X LIGHT CHAIN LIGHTCHAIN, RESIDUES 126-180 9606 3.4.21.6 | Details
59 3Q3K 2 B Factor X light chain UNP RESIDUES 125-178 9606 3.4.21.6 | Details
60 4X8U 2 L Factor VIIa (Light Chain) unp residues 150-204 9606 3.4.21.21 | Details
61 3M37 2 L Coagulation factor X UNP residues 127-178 9606 3.4.21.6 | Details
62 4X8S 2 L Factor VIIa (Light Chain) unp RESIDUES 150-204 9606 3.4.21.21 | Details
63 2WPI 1 E COAGULATION FACTOR IXA LIGHT CHAIN EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
64 2Q1J 2 B Factor X light chain (EC 3.4.21.6) Residues 128-178 9606 3.4.21.6 | Details
65 4ZXY 2 L Coagulation factor VIIa light chain UNP residues 150-204 9606 3.4.21.21 | Details
66 4JZD 2 L Factor VIIa (Light Chain) UNP residues 150-204 9606 3.4.21.21 | Details
67 1HCG 2 B BLOOD COAGULATION FACTOR XA 9606 3.4.21.6 | Details
68 1MQ6 2 L COAGULATION FACTOR X LIGHT CHAIN EPIDERMAL GROWTH FACTOR LIKE DOMAIN 2 9606 3.4.21.6 | Details
69 5VOE 2 L Coagulation factor X residues 128-178 9606 3.4.21.6 | Details
70 2XBY 2 L FACTOR X LIGHT CHAIN LIGHT CHAIN, RESIDUES 126-180 9606 3.4.21.6 | Details
71 1MQ5 2 L COAGULATION FACTOR X LIGHT CHAIN EPIDERMAL GROWTH FACTOR LIKE DOMAIN 2 9606 3.4.21.6 | Details
72 2W3K 2 B COAGULATION FACTOR X, LIGHT CHAIN LIGHT CHAIN, RESIDUES 128-178 9606 3.4.21.6 | Details
73 4NGA 2 L Factor VIIa (Light Chain) UNP residues 150-204 9606 3.4.21.21 | Details
74 2P93 2 L Factor Xa Residues 87-138 9606 3.4.21.6 | Details
75 2WPM 1 E COAGULATION FACTOR IXA LIGHT CHAIN EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
76 2EI8 2 B Coagulation factor X, light chain RESIDUES 85-138 9606 3.4.21.6 | Details
77 3KQC 2 L factor Xa light chain residues 127-178 of factor X uncleaved sequence 9606 3.4.21.6 | Details
78 5I46 2 L Coagulation factor VII (Light Chain) 9606 3.4.21.21 | Details
79 4NG9 2 L Factor VIIa (Light Chain) UKNP residues 150-204 9606 3.4.21.21 | Details
80 2D1J 2 B Coagulation factor X, light chain RESIDUES 85-138 9606 3.4.21.6 | Details
81 2W26 2 B ACTIVATED FACTOR XA HEAVY CHAIN RESIDUES 129-177 9606 3.4.21.6 | Details
82 1V3X 2 B Coagulation factor X, LIGHT CHAIN Residues 87-138 9606 3.4.21.6 | Details
83 4YT7 2 L Coagulation factor VII (light chain) UNP residues 148-204 9606 3.4.21.21 | Details
84 4JYV 2 L Factor VII heavy chain 9606 3.4.21.21 | Details
85 2P94 2 L Factor Xa Residues 87-138 9606 3.4.21.6 | Details
86 3KQB 2 L factor Xa light chain residues 127-178 of factor X uncleaved sequence 9606 3.4.21.6 | Details
87 4X8T 2 L Factor VIIa (Light Chain) unp RESIDUES 150-204 9606 3.4.21.21 | Details
88 2WPK 1 E COAGULATION FACTOR IXA LIGHT CHAIN EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
89 3TK5 2 B Factor X light chain UNP RESIDUES 125-178 9606 3.4.21.6 | Details
90 5U6J 2 L Coagulation factor VII Light Chain 9606 3.4.21.21 | Details
91 5K0H 2 B Coagulation factor X 9606 3.4.21.6 | Details
92 3M36 2 L Coagulation factor X UNP residues 127-178 9606 3.4.21.6 | Details
93 2BQ7 1 A COAGULATION FACTOR X DES-GLA LIGHT CHAIN, RESIDUES 126-177 9606 3.4.21.6 | Details
94 3KQE 2 L factor Xa light chain residues 127-178 of factor X uncleaved sequence 9606 3.4.21.6 | Details
95 2EI6 2 B Coagulation factor X, light chain RESIDUES 85-138 9606 3.4.21.6 | Details
96 1CVW 1 L COAGULATION FACTOR VIIA (LIGHT CHAIN) (DES-GLA) 9606 3.4.21.21 | Details
97 3CS7 2 L Coagulation factor X Coagulation Factor X, Light Chain 9606 3.4.21.6 | Details
98 3LIW 2 B Factor X light chain UNP RESIDUES 128-178 9606 3.4.21.6 | Details
99 2EI7 2 B Coagulation factor X, light chain RESIDUES 85-138 9606 3.4.21.6 | Details
100 5VOF 2 L Coagulation factor X residues 128-178 9606 3.4.21.6 | Details
101 4NA9 2 L Coagulation factor VII light chain 9606 3.4.21.21 | Details
102 2VVU 2 L FACTOR X LIGHT CHAIN EGF2, RESIDUES 126-180 9606 3.4.21.6 | Details
103 2P95 2 L Factor Xa Residues 87-138 9606 3.4.21.6 | Details
104 2G00 2 L Coagulation factor X PROTEOLYTIC CLEAVAGE PRODUCT Coagulation Factor X, Light Chain 9606 3.4.21.6 | Details
105 4X8V 2 L Factor VIIa (Light Chain) UNP RESIDUES 150-204 9606 3.4.21.21 | Details
106 2P16 2 L Coagulation factor X (EC 3.4.21.6) (Stuart factor) (Stuart-Prower factor) Coagulation Factor X, Light Chain 9606 3.4.21.6 | Details
107 2FZZ 2 L Coagulation factor X PROTEOLYTIC CLEAVAGE PRODUCT Coagulation Factor X, Light Chain 9606 3.4.21.6 | Details
108 2RA0 2 L Coagulation factor X light chain, UNP residues 128-178 9606 3.4.21.6 | Details
109 2BMG 1 A COAGULATION FACTOR X LIGHT CHAIN, RESIDUES 126-178 9606 3.4.21.6 | Details
110 2PHB 2 B Coagulation factor X, light chain light chain 9606 3.4.21.6 | Details
111 3LC5 2 B Coagulation factor IX residues 133-188 9606 3.4.21.22 | Details
112 3KQD 2 L factor Xa light chain residues 127-178 of factor X uncleaved sequence 9606 3.4.21.6 | Details
113 4ZXX 2 L Coagulation factor VIIa light chain UNP residues 150-204 9606 3.4.21.21 | Details
114 2BQW 1 A COAGULATION FACTOR X DES-GLA LIGHT CHAIN, RESIDUES 126-177 9606 3.4.21.6 | Details
115 1KIG 2 L FACTOR XA 9913 3.4.21.6 | Details
116 2P3F 2 L Coagulation factor X EGF-like 2 domain 9606 3.4.21.6 | Details
117 1RFN 2 B PROTEIN (COAGULATION FACTOR IX) FRAGMENT EGF2-CATALYTIC DOMAIN 9606 3.4.21.22 | Details
118 1W8B 2 L BLOOD COAGULATION FACTOR VIIA FACTOR VII LIGHT CHAIN, RESIDUES 148-204 9606 3.4.21.21 | Details
119 2BQ6 1 A COAGULATION FACTOR X DES-GLA LIGHT CHAIN, RESIDUES 126-177 9606 3.4.21.6 | Details
120 2GD4 1 A, L Coagulation factor X, Stuart factor, Stuart-Prower factor, Contains: Factor X light chain; Factor X heavy chain; Activated factor Xa heavy chain Residues 126-182 9606 3.4.21.6 | Details