1MQ6

Crystal Structure of 3-chloro-N-[4-chloro-2-[[(5-chloro-2-pyridinyl)amino]carbonyl]-6-methoxyphenyl]-4-[[(4,5-dihydro-2-oxazolyl)methylamino]methyl]-2-thiophenecarboxamide Complexed with Human Factor Xa


Sequence Similarity Clusters for the Entities in PDB 1MQ6

Entity #1 | Chains: A
COAGULATION FACTOR X HEAVY CHAIN protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 136 217
95 % 60 136 277 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 60 136 288
70 % 60 137 333
50 % 554 713 15
40 % 1283 1900 4
30 % 1290 1914 7
Entity #2 | Chains: L
COAGULATION FACTOR X LIGHT CHAIN protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 68 587
95 % 33 68 729 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.7
PDBFlex
90 % 33 68 759
70 % 33 68 801
50 % 33 69 838
40 % 68 120 508
30 % 99 154 409

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2Y5F 2 L FACTOR X LIGHT CHAIN RESIDUES 127-180 9606 3.4.21.6 | Details
2 2Y5G 2 L FACTOR X LIGHT CHAIN RESIDUES 127-180 9606 3.4.21.6 | Details
3 5JB9 1 E Coagulation factor IX Fragment: EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
4 2JKH 2 L FACTOR X LIGHT CHAIN EGF2, RESIDUES 126-180 9606 3.4.21.6 | Details
5 2Y5H 2 L FACTOR X LIGHT CHAIN RESIDUES 127-180 9606 3.4.21.6 | Details
6 5TNT 2 B Coagulation factor IX UNP residues 131-191 9606 3.4.21.22 | Details
7 4YZU 2 B Coagulation factor IX EGF-like 2 domain (UNP residues 131-191) 9606 3.4.21.22 | Details
8 4Z0K 2 B Coagulation factor IX EGF-like 2 domain (UNP residues 131-191) 9606 3.4.21.22 | Details
9 5JBA 1 E Coagulation factor IX Fragment: EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
10 5PAX 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
11 5PAG 1 A Coagulation factor VII light chain FACTOR VII HEAVY CHAIN, RESIDUES 149-466 9606 3.4.21.21 | Details
12 5JB8 1 E Coagulation factor IX Fragment: EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
13 5PAO 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
14 5PAV 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
15 5PAE 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
16 5TNO 2 B Coagulation factor IX UNP residues 131-191 9606 3.4.21.22 | Details
17 5PAF 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
18 3KL6 2 B Coagulation Factor X light chain Factor X light chain residues 126-179 9606 3.4.21.6 | Details
19 5PB2 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
20 5JBB 1 E Coagulation factor IX Fragment: EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
21 5PAS 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
22 5PAC 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
23 5PAU 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
24 5PA9 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
25 4JZE 2 L Factor VIIa (Light Chain) UNP residues 150-204 9606 3.4.21.21 | Details
26 2BZ6 2 L BLOOD COAGULATION FACTOR VIIA FACTOR VII LIGHT CHAIN, RESIDUES 150-202 9606 3.4.21.21 | Details
27 5PAN 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
28 5PAK 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
29 5PAQ 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
30 5PAM 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
31 5PAT 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
32 3FFG 2 L Coagulation factor X, light chain sequence database residues 127-178 9606 3.4.21.6 | Details
33 2VWO 2 L FACTOR X LIGHT CHAIN EGF2, RESIDUES 126-180 9606 3.4.21.6 | Details
34 2VWN 2 L FACTOR X LIGHT CHAIN EGF2, RESIDUES 126-180 9606 3.4.21.6 | Details
35 2WPH 1 E COAGULATION FACTOR IXA LIGHT CHAIN EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
36 2P3U 1 A Coagulation factor X EGF-like 2 domain 9606 3.4.21.6 | Details
37 5PAY 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
38 2WPJ 1 E COAGULATION FACTOR IXA LIGHT CHAIN EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
39 5PAI 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
40 2PR3 2 B COAGULATION FACTOR X, LIGHT CHAIN LIGHT CHAIN 9606 3.4.21.6 | Details
41 2XBV 2 L FACTOR X LIGHT CHAIN LIGHTCHAIN, RESIDUES 126-180 9606 3.4.21.6 | Details
42 2BOK 2 L COAGULATION FACTOR X EGF2 DOMAIN, RESIDUES 126-180 9606 3.4.21.6 | Details
43 2XC5 2 L FACTOR X LIGHT CHAIN LIGHTCHAIN, RESIDUES 126-180 9606 3.4.21.6 | Details
44 5L30 2 L Coagulation factor VII (Light Chain) 9606 3.4.21.21 | Details
45 5EGM 2 B Coagulation factor IX UNP residues 131-191 9606 3.4.21.22 | Details
46 2XC4 2 L FACTOR X LIGHT CHAIN LIGHT CHAIN, RESIDUES 126-180 9606 3.4.21.6 | Details
47 2XBW 2 L FACTOR X LIGHT CHAIN LIGHT CHAIN, RESIDUES 126-180 9606 3.4.21.6 | Details
48 2VVV 2 L FACTOR X LIGHT CHAIN EGF2, RESIDUES 126-180 9606 3.4.21.6 | Details
49 4ZAE 2 B Coagulation factor IX EG-like 2 domain (UNP residues 131-191) 9606 3.4.21.22 | Details
50 5PAJ 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
51 1W7X 2 L BLOOD COAGULATION FACTOR VIIA FACTOR VII LIGHT CHAIN, RESIDUES 151-204 9606 3.4.21.21 | Details
52 1KLI 1 L factor VIIa N-terminal truncation light chain 9606 3.4.21.21 | Details
53 3KCG 1 L Coagulation factor IXa light chain EGF2 9606 3.4.21.22 | Details
54 4JYU 2 L Factor VII heavy chain 9606 3.4.21.21 | Details
55 5L2Y 2 L Coagulation factor VII (Light Chain) 9606 3.4.21.21 | Details
56 5L2Z 2 L Coagulation factor VII (Light Chain) 9606 3.4.21.21 | Details
57 3CEN 2 L COAGULATION FACTOR X, LIGHT CHAIN UNP residues 127-178 9606 3.4.21.6 | Details
58 4JZF 2 L Factor VIIa (Light Chain) UNP residues 150-204 9606 3.4.21.21 | Details
59 2VWL 2 L FACTOR X LIGHT CHAIN EGF2, RESIDUES 126-180 9606 3.4.21.6 | Details
60 5JBC 1 E Coagulation factor IX Fragment: EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
61 5PB5 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
62 5TQF 2 L Factor VIIa (Light Chain) 9606 3.4.21.21 | Details
63 4ISH 2 L Factor VII light chain UNP residues 150-204 9606 3.4.21.21 | Details
64 3IIT 2 B Factor X light chain UNP RESIDUES 125-178 9606 3.4.21.6 | Details
65 3TK6 2 B Factor X light chain UNP RESIDUES 125-178 9606 3.4.21.6 | Details
66 2XBX 2 L FACTOR X LIGHT CHAIN LIGHTCHAIN, RESIDUES 126-180 9606 3.4.21.6 | Details
67 5TQG 2 L Factor VIIa (Light Chain) 9606 3.4.21.21 | Details
68 5TQE 2 L Factor VIIa (Light Chain) 9606 3.4.21.21 | Details
69 5PB6 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
70 5PB0 1 A Coagulation factor VII light chain FACTOR VII RESIDUES 148-466 9606 3.4.21.21 | Details
71 5PB1 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
72 1Z6E 2 L Coagulation factor X UNP residues 127-178 9606 3.4.21.6 | Details
73 5PB3 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
74 5PA8 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
75 2P3T 1 A Coagulation factor X EGF-like 2 domain 9606 3.4.21.6 | Details
76 3LC3 2 B, D Coagulation factor IX residues 133-188 9606 3.4.21.22 | Details
77 1FJS 2 L COAGULATION FACTOR XA LIGHT CHAIN, EPIDERMAL GROWTH FACTOR LIKE DOMAIN 9606 3.4.21.6 | Details
78 2WPL 1 E COAGULATION FACTOR IXA LIGHT CHAIN EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
79 5PAA 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
80 5PAB 2 L Coagulation factor VII light chain 9606 3.4.21.21 | Details
81 1YGC 2 L Coagulation factor VII light chain, del 1-149 from full length (residues 150-212) 9606 3.4.21.21 | Details
82 2VVC 2 K, L FACTOR X LIGHT CHAIN EGF2, RESIDUES 126-180 9606 3.4.21.6 | Details
83 2VWM 2 K, L FACTOR X LIGHT CHAIN EGF2, RESIDUES 126-180 9606 3.4.21.6 | Details
84 4ISI 2 L Factor VII light chain UNP residues 150-204 9606 3.4.21.21 | Details
85 4YT6 2 L Coagulation factor VII (light chain) UNP residues 148-204 9606 3.4.21.21 | Details
86 2W3I 2 B COAGULATION FACTOR X, LIGHT CHAIN LIGHT CHAIN, RESIDUES 128-178 9606 3.4.21.6 | Details
87 2XC0 2 L FACTOR X LIGHT CHAIN LIGHTCHAIN, RESIDUES 126-180 9606 3.4.21.6 | Details
88 3Q3K 2 B Factor X light chain UNP RESIDUES 125-178 9606 3.4.21.6 | Details
89 4X8U 2 L Factor VIIa (Light Chain) unp residues 150-204 9606 3.4.21.21 | Details
90 3M37 2 L Coagulation factor X UNP residues 127-178 9606 3.4.21.6 | Details
91 4X8S 2 L Factor VIIa (Light Chain) unp RESIDUES 150-204 9606 3.4.21.21 | Details
92 2WPI 1 E COAGULATION FACTOR IXA LIGHT CHAIN EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
93 2Q1J 2 B Factor X light chain (EC 3.4.21.6) Residues 128-178 9606 3.4.21.6 | Details
94 4ZXY 2 L Coagulation factor VIIa light chain UNP residues 150-204 9606 3.4.21.21 | Details
95 5PAR 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
96 4JZD 2 L Factor VIIa (Light Chain) UNP residues 150-204 9606 3.4.21.21 | Details
97 1JBU 2 L COAGULATION FACTOR VII Light chain 9606 3.4.21.21 | Details
98 1HCG 2 B BLOOD COAGULATION FACTOR XA 9606 3.4.21.6 | Details
99 1MQ6 2 L COAGULATION FACTOR X LIGHT CHAIN EPIDERMAL GROWTH FACTOR LIKE DOMAIN 2 9606 3.4.21.6 | Details
100 5VOE 2 L Coagulation factor X residues 128-178 9606 3.4.21.6 | Details
101 2XBY 2 L FACTOR X LIGHT CHAIN LIGHT CHAIN, RESIDUES 126-180 9606 3.4.21.6 | Details
102 1MQ5 2 L COAGULATION FACTOR X LIGHT CHAIN EPIDERMAL GROWTH FACTOR LIKE DOMAIN 2 9606 3.4.21.6 | Details
103 2W3K 2 B COAGULATION FACTOR X, LIGHT CHAIN LIGHT CHAIN, RESIDUES 128-178 9606 3.4.21.6 | Details
104 4NGA 2 L Factor VIIa (Light Chain) UNP residues 150-204 9606 3.4.21.21 | Details
105 2P93 2 L Factor Xa Residues 87-138 9606 3.4.21.6 | Details
106 2WPM 1 E COAGULATION FACTOR IXA LIGHT CHAIN EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
107 5PAW 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
108 2EI8 2 B Coagulation factor X, light chain RESIDUES 85-138 9606 3.4.21.6 | Details
109 3KQC 2 L factor Xa light chain residues 127-178 of factor X uncleaved sequence 9606 3.4.21.6 | Details
110 5I46 2 L Coagulation factor VII (Light Chain) 9606 3.4.21.21 | Details
111 4NG9 2 L Factor VIIa (Light Chain) UKNP residues 150-204 9606 3.4.21.21 | Details
112 2D1J 2 B Coagulation factor X, light chain RESIDUES 85-138 9606 3.4.21.6 | Details
113 2W26 2 B ACTIVATED FACTOR XA HEAVY CHAIN RESIDUES 129-177 9606 3.4.21.6 | Details
114 1V3X 2 B Coagulation factor X, LIGHT CHAIN Residues 87-138 9606 3.4.21.6 | Details
115 4YT7 2 L Coagulation factor VII (light chain) UNP residues 148-204 9606 3.4.21.21 | Details
116 4JYV 2 L Factor VII heavy chain 9606 3.4.21.21 | Details
117 2P94 2 L Factor Xa Residues 87-138 9606 3.4.21.6 | Details
118 3KQB 2 L factor Xa light chain residues 127-178 of factor X uncleaved sequence 9606 3.4.21.6 | Details
119 4X8T 2 L Factor VIIa (Light Chain) unp RESIDUES 150-204 9606 3.4.21.21 | Details
120 2WPK 1 E COAGULATION FACTOR IXA LIGHT CHAIN EGF2 DOMAIN, RESIDUES 133-191 9606 3.4.21.22 | Details
121 3TK5 2 B Factor X light chain UNP RESIDUES 125-178 9606 3.4.21.6 | Details
122 5U6J 2 L Coagulation factor VII Light Chain 9606 3.4.21.21 | Details
123 5K0H 2 B Coagulation factor X 9606 3.4.21.6 | Details
124 3M36 2 L Coagulation factor X UNP residues 127-178 9606 3.4.21.6 | Details
125 2BQ7 1 A COAGULATION FACTOR X DES-GLA LIGHT CHAIN, RESIDUES 126-177 9606 3.4.21.6 | Details
126 3KQE 2 L factor Xa light chain residues 127-178 of factor X uncleaved sequence 9606 3.4.21.6 | Details
127 2EI6 2 B Coagulation factor X, light chain RESIDUES 85-138 9606 3.4.21.6 | Details
128 1CVW 1 L COAGULATION FACTOR VIIA (LIGHT CHAIN) (DES-GLA) 9606 3.4.21.21 | Details
129 3CS7 2 L Coagulation factor X Coagulation Factor X, Light Chain 9606 3.4.21.6 | Details
130 3LIW 2 B Factor X light chain UNP RESIDUES 128-178 9606 3.4.21.6 | Details
131 2EI7 2 B Coagulation factor X, light chain RESIDUES 85-138 9606 3.4.21.6 | Details
132 5VOF 2 L Coagulation factor X residues 128-178 9606 3.4.21.6 | Details
133 4NA9 2 L Coagulation factor VII light chain 9606 3.4.21.21 | Details
134 2VVU 2 L FACTOR X LIGHT CHAIN EGF2, RESIDUES 126-180 9606 3.4.21.6 | Details
135 2P95 2 L Factor Xa Residues 87-138 9606 3.4.21.6 | Details
136 5PB4 1 A Coagulation factor VII light chain 9606 3.4.21.21 | Details
137 2G00 2 L Coagulation factor X PROTEOLYTIC CLEAVAGE PRODUCT Coagulation Factor X, Light Chain 9606 3.4.21.6 | Details
138 4X8V 2 L Factor VIIa (Light Chain) UNP RESIDUES 150-204 9606 3.4.21.21 | Details
139 2P16 2 L Coagulation factor X (EC 3.4.21.6) (Stuart factor) (Stuart-Prower factor) Coagulation Factor X, Light Chain 9606 3.4.21.6 | Details
140 2FZZ 2 L Coagulation factor X PROTEOLYTIC CLEAVAGE PRODUCT Coagulation Factor X, Light Chain 9606 3.4.21.6 | Details
141 2RA0 2 L Coagulation factor X light chain, UNP residues 128-178 9606 3.4.21.6 | Details
142 1KLJ 1 L factor VIIa N-terminal truncation light chain 9606 3.4.21.21 | Details
143 2BMG 1 A COAGULATION FACTOR X LIGHT CHAIN, RESIDUES 126-178 9606 3.4.21.6 | Details
144 2PHB 2 B Coagulation factor X, light chain light chain 9606 3.4.21.6 | Details
145 3LC5 2 B Coagulation factor IX residues 133-188 9606 3.4.21.22 | Details
146 3KQD 2 L factor Xa light chain residues 127-178 of factor X uncleaved sequence 9606 3.4.21.6 | Details
147 4ZXX 2 L Coagulation factor VIIa light chain UNP residues 150-204 9606 3.4.21.21 | Details
148 2BQW 1 A COAGULATION FACTOR X DES-GLA LIGHT CHAIN, RESIDUES 126-177 9606 3.4.21.6 | Details
149 1KIG 2 L FACTOR XA 9913 3.4.21.6 | Details
150 2P3F 2 L Coagulation factor X EGF-like 2 domain 9606 3.4.21.6 | Details
151 1RFN 2 B PROTEIN (COAGULATION FACTOR IX) FRAGMENT EGF2-CATALYTIC DOMAIN 9606 3.4.21.22 | Details
152 1W8B 2 L BLOOD COAGULATION FACTOR VIIA FACTOR VII LIGHT CHAIN, RESIDUES 148-204 9606 3.4.21.21 | Details
153 2BQ6 1 A COAGULATION FACTOR X DES-GLA LIGHT CHAIN, RESIDUES 126-177 9606 3.4.21.6 | Details
154 2GD4 1 A, L Coagulation factor X, Stuart factor, Stuart-Prower factor, Contains: Factor X light chain; Factor X heavy chain; Activated factor Xa heavy chain Residues 126-182 9606 3.4.21.6 | Details