1MQ6

Crystal Structure of 3-chloro-N-[4-chloro-2-[[(5-chloro-2-pyridinyl)amino]carbonyl]-6-methoxyphenyl]-4-[[(4,5-dihydro-2-oxazolyl)methylamino]methyl]-2-thiophenecarboxamide Complexed with Human Factor Xa


Sequence Similarity Clusters for the Entities in PDB 1MQ6

Entity #1 | Chains: A
COAGULATION FACTOR X HEAVY CHAIN protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 135 210
95 % 60 135 268 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 60 135 279
70 % 60 136 323
50 % 556 709 14
40 % 1279 1884 4
30 % 1286 1898 7
Entity #2 | Chains: L
COAGULATION FACTOR X LIGHT CHAIN protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 67 567
95 % 33 67 702 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.7
PDBFlex
90 % 33 67 727
70 % 33 67 773
50 % 33 68 826
40 % 68 119 493
30 % 99 153 389

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2Y5F 1 A ACTIVATED FACTOR XA HEAVY CHAIN RESIDUES 235-468 9606 3.4.21.6 | Details
2 2Y5G 1 A ACTIVATED FACTOR XA HEAVY CHAIN RESIDUES 235-468 9606 3.4.21.6 | Details
3 2JKH 1 A ACTIVATED FACTOR XA HEAVY CHAIN CATALYTIC, RESIDUES 235-475 9606 3.4.21.6 | Details
4 2Y5H 1 A ACTIVATED FACTOR XA HEAVY CHAIN RESIDUES 235-468 9606 3.4.21.6 | Details
5 3KL6 1 A Coagulation Factor X heavy chain Factor X heavy chain residues 235-475 9606 3.4.21.6 | Details
6 4Y6D 1 A Coagulation factor X 9606 3.4.21.6 | Details
7 3FFG 1 A Coagulation factor X, heavy chain sequence database residues 235-468 9606 3.4.21.6 | Details
8 2VWO 1 A ACTIVATED FACTOR XA HEAVY CHAIN PEPTIDASE S1 DOMAIN, RESIDUES 235-475 9606 3.4.21.6 | Details
9 2VWN 1 A ACTIVATED FACTOR XA HEAVY CHAIN PEPTIDASE S1 DOMAIN, RESIDUES 235-475 9606 3.4.21.6 | Details
10 2P3U 2 B Coagulation factor X CATALYTIC DOMAIN 9606 3.4.21.6 | Details
11 2PR3 1 A COAGULATION FACTOR X, HEAVY CHAIN HEAVY CHAIN 9606 3.4.21.6 | Details
12 2XBV 1 A ACTIVATED FACTOR XA HEAVY CHAIN HEAVY CHAIN, RESIDUES 235-475 9606 3.4.21.6 | Details
13 2BOK 1 A COAGULATION FACTOR X CATALYTIC DOMAIN, RESIDUES 234-475 9606 3.4.21.6 | Details
14 2Y81 1 A ACTIVATED FACTOR XA HEAVY CHAIN DISULPHIDE LINKED TO OTHER CHAIN 9606 3.4.21.6 | Details
15 2VH0 1 A ACTIVATED FACTOR XA HEAVY CHAIN DISULPHIDE LINKED TO OTHER CHAIN ACTIVATED DESGLA, RESIDUES 235-488 9606 3.4.21.6 | Details
16 2XC5 1 A ACTIVATED FACTOR XA HEAVY CHAIN HEAVY CHAIN, RESIDUES 235-475 9606 3.4.21.6 | Details
17 2XC4 1 A ACTIVATED FACTOR XA HEAVY CHAIN HEAVY CHAIN, RESIDUES 235-475 9606 3.4.21.6 | Details
18 2XBW 1 A ACTIVATED FACTOR XA HEAVY CHAIN HEAVY CHAIN, RESIDUES 235-475 9606 3.4.21.6 | Details
19 2VVV 1 A ACTIVATED FACTOR XA HEAVY CHAIN CATALYTIC, RESIDUES 235-475 9606 3.4.21.6 | Details
20 2UWP 1 A COAGULATION FACTOR X DISULPHIDE LINKED TO OTHER CHAIN ACTIVATED DESGLA, RESIDUES 235-488 9606 3.4.21.6 | Details
21 4Y7B 1 A Coagulation factor X Disulphide linked to other chain 9606 3.4.21.6 | Details
22 3CEN 1 A COAGULATION FACTOR X, HEAVY CHAIN Activated factor Xa heavy chain, UNP residues 235-468 9606 3.4.21.6 | Details
23 2UWO 1 A COAGULATION FACTOR X DISULPHIDE LINKED TO OTHER CHAIN ACTIVATED DESGLA, RESIDUES 235-488 9606 3.4.21.6 | Details
24 2J4I 1 A COAGULATION FACTOR X DISULPHIDE LINKED TO OTHER CHAIN ACTIVATED DESGLA, RESIDUES 235-488 9606 3.4.21.6 | Details
25 2VWL 1 A ACTIVATED FACTOR XA HEAVY CHAIN PEPTIDASE S1, RESIDUES 235-475 9606 3.4.21.6 | Details
26 4Y71 1 A Coagulation factor X 9606 3.4.21.6 | Details
27 3IIT 1 A Activated factor Xa heavy chain 9606 3.4.21.6 | Details
28 3TK6 1 A Factor X heavy chain UNP RESIDUES 235-467 9606 3.4.21.6 | Details
29 3K9X 2 B, D PROTEIN (Coagulation factor X) CATALYTIC DOMAINS (UNP residues 235 to 472) 9606 3.4.21.6 | Details
30 4ZH8 1 A Coagulation factor X residues 235 - 488 9606 3.4.21.6 | Details
31 2XBX 1 A ACTIVATED FACTOR XA HEAVY CHAIN HEAVY CHAIN, RESIDUES 235-475 9606 3.4.21.6 | Details
32 2Y7Z 1 A ACTIVATED FACTOR XA HEAVY CHAIN DISULPHIDE LINKED TO OTHER CHAIN 9606 3.4.21.6 | Details
33 4ZHA 1 A Coagulation factor X residues 235-488 9606 3.4.21.6 | Details
34 2Y7X 1 A ACTIVATED FACTOR XA HEAVY CHAIN DISULPHIDE LINKED TO OTHER CHAIN 9606 3.4.21.6 | Details
35 2Y80 1 A ACTIVATED FACTOR XA HEAVY CHAIN DISULPHIDE LINKED TO OTHER CHAIN 9606 3.4.21.6 | Details
36 1Z6E 1 A Coagulation factor X UNP residues 235-468 9606 3.4.21.6 | Details
37 2WYG 1 A ACTIVATED FACTOR XA HEAVY CHAIN DISULPHIDE LINKED TO OTHER CHAIN ACTIVATED DESGLA, RESIDUES 235-488 9606 3.4.21.6 | Details
38 2UWL 1 A COAGULATION FACTOR X DISULPHIDE LINKED TO OTHER CHAIN ACTIVATED DESGLA, RESIDUES 235-488 9606 3.4.21.6 | Details
39 2J2U 1 A COAGULATION FACTOR X HEAVY CHAIN DISULPHIDE LINKED TO OTHER CHAIN ACTIVATED DESGLA, RESIDUES 235-488 9606 3.4.21.6 | Details
40 2P3T 2 B Coagulation factor X CATALYTIC DOMAIN 9606 3.4.21.6 | Details
41 1FJS 1 A COAGULATION FACTOR XA HEAVY CHAIN, CATALYTIC DOMAIN 9606 3.4.21.6 | Details
42 2J34 1 A ACTIVATED FACTOR XA HEAVY CHAIN DISULPHIDE LINKED TO OTHER CHAIN ACTIVATED DESGLA, RESIDUES 235-488 9606 3.4.21.6 | Details
43 2VH6 1 A ACTIVATED FACTOR XA HEAVY CHAIN DISULPHIDE LINKED TO OTHER CHAIN ACTIVATED DESGLA, RESIDUES 235-488 9606 3.4.21.6 | Details
44 4Y7A 1 A Coagulation factor X 9606 3.4.21.6 | Details
45 4Y76 1 A Coagulation factor X 9606 3.4.21.6 | Details
46 2VVC 1 A, B ACTIVATED FACTOR XA HEAVY CHAIN PEPTIDASE S1 DOMAIN, RESIDUES 235-475 9606 3.4.21.6 | Details
47 2VWM 1 A, B ACTIVATED FACTOR XA HEAVY CHAIN PEPTIDASE S1 DOMAIN, RESIDUES 235-475 9606 3.4.21.6 | Details
48 2W3I 1 A COAGULATION FACTOR X, HEAVY CHAIN HEAVY CHAIN, RESIDUES 235-468 9606 3.4.21.6 | Details
49 2J95 1 A ACTIVATED FACTOR XA HEAVY CHAIN DISULPHIDE LINKED TO OTHER CHAIN ACTIVATED DESGLA, RESIDUES 235-488 9606 3.4.21.6 | Details
50 2XC0 1 A ACTIVATED FACTOR XA HEAVY CHAIN HEAVY CHAIN, RESIDUES 235-475 9606 3.4.21.6 | Details
51 3Q3K 1 A Activated factor Xa heavy chain UNP RESIDUES 235-467 9606 3.4.21.6 | Details
52 3M37 1 A Coagulation factor X Peptidase S1 9606 3.4.21.6 | Details
53 4Y79 1 A Coagulation factor X 9606 3.4.21.6 | Details
54 2Q1J 1 A Activated factor Xa heavy chain (EC 3.4.21.6) 9606 3.4.21.6 | Details
55 1C5M 1 D PROTEIN (COAGULATION FACTOR X) HEAVY CHAIN 9606 3.4.21.6 | Details
56 1LPG 2 B Blood coagulation factor Xa 9606 3.4.21.6 | Details
57 2J94 1 A COAGULATION FACTOR X DISULPHIDE LINKED TO OTHER CHAIN ACTIVATED DESGLA, RESIDUES 235-488 9606 3.4.21.6 | Details
58 1G2L 1 A COAGULATION FACTOR X CATALYTIC DOMAIN 9606 3.4.21.6 | Details
59 1HCG 1 A BLOOD COAGULATION FACTOR XA 9606 3.4.21.6 | Details
60 1MQ6 1 A COAGULATION FACTOR X HEAVY CHAIN CATALYTIC DOMAIN 9606 3.4.21.6 | Details
61 2XBY 1 A ACTIVATED FACTOR XA HEAVY CHAIN HEAVY CHAIN, RESIDUES 235-475 9606 3.4.21.6 | Details
62 1MQ5 1 A COAGULATION FACTOR X HEAVY CHAIN CATALYTIC DOMAIN 9606 3.4.21.6 | Details
63 2CJI 1 A ACTIVATED FACTOR XA HEAVY CHAIN DISULPHIDE LINKED TO OTHER CHAIN ACTIVATED DESGLA, RESIDUES 235-488 9606 3.4.21.6 | Details
64 3HPT 2 B, D Coagulation factor X Activated factor Xa heavy chain: UNP residues 235-472 9606 3.4.21.6 | Details
65 2W3K 1 A COAGULATION FACTOR X, HEAVY CHAIN HEAVY CHAIN, RESIDUES 235-468 9606 3.4.21.6 | Details
66 1NFW 1 A COAGULATION FACTOR XA, heavy chain 9606 3.4.21.6 | Details
67 2Y82 1 A ACTIVATED FACTOR XA HEAVY CHAIN DISULPHIDE LINKED TO OTHER CHAIN 9606 3.4.21.6 | Details
68 1NFY 1 A Coagulation factor XA, heavy chain 9606 3.4.21.6 | Details
69 2P93 1 A Factor Xa Residues 16-243 9606 3.4.21.6 | Details
70 2EI8 1 A Coagulation factor X, heavy chain RESIDUES 16-243 9606 3.4.21.6 | Details
71 3KQC 1 A factor Xa heavy chain residues 235-468 of factor X uncleaved sequence 9606 3.4.21.6 | Details
72 2D1J 1 A Coagulation factor X, heavy chain RESIDUES 16-243 9606 3.4.21.6 | Details
73 4BTI 2 B, F COAGULATION FACTOR X LIGHT CHAIN 9606 3.4.21.6 | Details
74 1NFU 1 A COAGULATION FACTOR XA, HEAVY CHAIN 9606 3.4.21.6 | Details
75 1LPK 2 B Blood coagulation factor Xa 9606 3.4.21.6 | Details
76 2J38 1 A ACTIVATED FACTOR XA HEAVY CHAIN DISULPHIDE LINKED TO OTHER CHAIN ACTIVATED DESGLA, RESIDUES 235-488 9606 3.4.21.6 | Details
77 2W26 1 A ACTIVATED FACTOR XA HEAVY CHAIN RESIDUES 235-468 9606 3.4.21.6 | Details
78 1V3X 1 A Coagulation factor X, HEAVY CHAIN Residues 16-243 9606 3.4.21.6 | Details
79 1F0R 1 A COAGULATION FACTOR XA ACTIVATED FACTOR XA, HEAVY CHAIN 9606 3.4.21.6 | Details
80 1F0S 1 A COAGULATION FACTOR XA ACTIVATED FACTOR XA, HEAVY CHAIN 9606 3.4.21.6 | Details
81 2P94 1 A Factor Xa Residues 16-244 9606 3.4.21.6 | Details
82 3KQB 1 A factor Xa heavy chain residues 235-468 of factor X uncleaved sequence 9606 3.4.21.6 | Details
83 1KSN 1 A COAGULATION FACTOR XA ACTIVATED FACTOR XA, HEAVY CHAIN 9606 3.4.21.6 | Details
84 1NFX 1 A COAGULATION FACTOR XA, heavy chain 9606 3.4.21.6 | Details
85 4BTU 2 B, F COAGULATION FACTOR X HEAVY CHAIN HEAVY CHAIN, RESIDUES 235-488 9606 3.4.21.6 | Details
86 2BOH 2 B COAGULATION FACTOR XA LIGHT CHAIN, RESIDUES 235-488 9606 3.4.21.6 | Details
87 1EZQ 1 A COAGULATION FACTOR XA ACTIVATED FACTOR XA, HEAVY CHAIN 9606 3.4.21.6 | Details
88 3TK5 1 A Factor X heavy chain UNP RESIDUES 235-467 9606 3.4.21.6 | Details
89 1WU1 1 A Coagulation factor X, heavy chain RESIDUES 16-243 9606 3.4.21.6 | Details
90 5K0H 1 A Coagulation factor X 9606 3.4.21.6 | Details
91 3M36 1 A Coagulation factor X Peptidase S1 9606 3.4.21.6 | Details
92 1XKA 2 C BLOOD COAGULATION FACTOR XA PROTEOLYTIC CLEAVAGE PRODUCT, GLA DOMAIN 9606 3.4.21.6 | Details
93 2BQ7 2 B FACTOR XA HEAVY CHAIN, RESIDUES 220-468 9606 3.4.21.6 | Details
94 3KQE 1 A factor Xa heavy chain residues 235-468 of factor X uncleaved sequence 9606 3.4.21.6 | Details
95 2EI6 1 A Coagulation factor X, heavy chain RESIDUES 16-243 9606 3.4.21.6 | Details
96 2H9E 1 H Coagulation factor X heavy chain catalytic domain 9606 3.4.21.6 | Details
97 3CS7 1 A Coagulation factor X Coagulation Factor X, Heavy Chain 9606 3.4.21.6 | Details
98 1LPZ 2 B Blood coagulation factor Xa 9606 3.4.21.6 | Details
99 3LIW 1 A Activated factor Xa heavy chain UNP RESIDUES 235-468 9606 3.4.21.6 | Details
100 2EI7 1 A Coagulation factor X, heavy chain RESIDUES 16-243 9606 3.4.21.6 | Details
101 5VOF 1 H Coagulation factor X residue 235-467 9606 3.4.21.6 | Details
102 2WYJ 1 A ACTIVATED FACTOR XA HEAVY CHAIN DISULPHIDE LINKED TO OTHER CHAIN ACTIVATED DESGLA, RESIDUES 235-488 9606 3.4.21.6 | Details
103 4A7I 2 B ACTIVATED FACTOR XA HEAVY CHAIN XA ACTIVATED FACTOR X HEAVY CHAIN, RESIDUES 235-488 9606 3.4.21.6 | Details
104 2VVU 1 A ACTIVATED FACTOR XA HEAVY CHAIN CATALYTIC, RESIDUES 235-475 9606 3.4.21.6 | Details
105 3SW2 2 B Coagulation factor X Activated factor Xa heavy chain (UNP residues 235-472) 9606 3.4.21.6 | Details
106 2P95 1 A Factor Xa Residues 16-244 9606 3.4.21.6 | Details
107 1XKB 2 C, D BLOOD COAGULATION FACTOR XA PROTEOLYTIC CLEAVAGE PRODUCT, GLA DOMAIN 9606 3.4.21.6 | Details
108 3ENS 2 B, D Activated factor Xa heavy chain sequence database residues 235-472 9606 3.4.21.6 | Details
109 2G00 1 A Coagulation factor X PROTEOLYTIC CLEAVAGE PRODUCT Coagulation Factor X, Heavy Chain 9606 3.4.21.6 | Details
110 1IQG 1 A coagulation Factor Xa heavy chain, catalytic domain (residues 235-469) 9606 3.4.21.6 | Details
111 2P16 1 A Coagulation factor X (EC 3.4.21.6) (Stuart factor) (Stuart-Prower factor) Coagulation Factor X, Heavy Chain 9606 3.4.21.6 | Details
112 2FZZ 1 A Coagulation factor X PROTEOLYTIC CLEAVAGE PRODUCT Coagulation Factor X, Heavy Chain 9606 3.4.21.6 | Details
113 1IQN 1 A coagulation Factor Xa heavy chain, catalytic domain (residues 235-469) 9606 3.4.21.6 | Details
114 1LQD 2 B Blood coagulation factor Xa 9606 3.4.21.6 | Details
115 2RA0 1 A Coagulation factor X heavy chain, UNP residues 235-468 9606 3.4.21.6 | Details
116 4BTT 2 B, F COAGULATION FACTOR X HEAVY CHAIN, RESIDUES 235-488 9606 3.4.21.6 | Details
117 2BMG 2 B COAGULATION FACTOR X HEAVY CHAIN, RESIDUES 235-468 9606 3.4.21.6 | Details
118 1IQM 1 A coagulation Factor Xa heavy chain, catalytic domain (residues 235-469) 9606 3.4.21.6 | Details
119 2PHB 1 A Coagulation factor X, heavy chain heavy chain 9606 3.4.21.6 | Details
120 3KQD 1 A factor Xa heavy chain residues 235-468 of factor X uncleaved sequence 9606 3.4.21.6 | Details
121 1IQI 1 A coagulation Factor Xa heavy chain, catalytic domain (residues 235-469) 9606 3.4.21.6 | Details
122 1IQL 1 A coagulation Factor Xa heavy chain, catalytic domain (residues 235-469) 9606 3.4.21.6 | Details
123 1IQH 1 A coagulation Factor Xa heavy chain, catalytic domain (residues 235-469) 9606 3.4.21.6 | Details
124 2BQW 2 B FACTOR XA HEAVY CHAIN, RESIDUES 220-468 9606 3.4.21.6 | Details
125 1P0S 2 H Coagulation factor X precursor Factor Xa Heavy Chain 9606 3.4.21.6 | Details
126 1IQJ 1 A coagulation Factor Xa heavy chain, catalytic domain (residues 235-469) 9606 3.4.21.6 | Details
127 1IOE 1 A COAGULATION FACTOR XA HEAVY CHAIN, CATALYTIC DOMAIN (RESIDUES 235-469) 9606 3.4.21.6 | Details
128 1IQF 1 A coagulation Factor Xa heavy chain, catalytic domain (residues 235-469) 9606 3.4.21.6 | Details
129 2P3F 1 H Coagulation factor X Activated factor Xa heavy chain domain 9606 3.4.21.6 | Details
130 1IQK 1 A coagulation Factor Xa heavy chain, catalytic domain (residues 235-469) 9606 3.4.21.6 | Details
131 1FAX 1 A FACTOR XA 9606 3.4.21.6 | Details
132 1IQE 1 A coagulation Factor Xa heavy chain, catalytic domain (residues 235-469) 9606 3.4.21.6 | Details
133 2BQ6 2 B FACTOR XA HEAVY CHAIN, RESIDUES 220-468 9606 3.4.21.6 | Details
134 1G2M 1 A COAGULATION FACTOR X CATALYTIC DOMAIN 9606 3.4.21.6 | Details
135 2GD4 2 B, H Coagulation factor, Stuart factor, Stuart-Prower factor, Contains: Factor X light chain; Factor X heavy chain; Activated factor Xa heavy chain Residues 235-475 9606 3.4.21.6 | Details