Sequence Similarity Clusters for the Entities in PDB 1MQ2

Entity #1 | Chains: T
5'-D(*CP*CP*GP*AP*CP*(8OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(2DA))-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D
5'-D(P*GP*TP*CP*GP*G)-3' dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
DNA POLYMERASE BETA protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 279 280 79
95 % 321 322 76 Flexibility: Medium
Max RMSD: 14.0, Avg RMSD: 3.1
PDBFlex
90 % 321 322 81
70 % 321 322 95
50 % 321 322 133
40 % 321 322 148
30 % 450 452 105

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.