Sequence Similarity Clusters for the Entities in PDB 1MPA

Entity #1 | Chains: L
MN12H2 IGG2A-KAPPA protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28660
95 % 96 148 151 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 104 158 148
70 % 1286 2479 1
50 % 2627 5021 1
40 % 2627 5021 1
30 % 3038 5951 1
Entity #2 | Chains: H
MN12H2 IGG2A-KAPPA protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28524
95 % 1 3 23768 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.0
PDBFlex
90 % 1 3 23025
70 % 1275 2429 2
50 % 2628 5021 1
40 % 2628 5021 1
30 % 3039 5951 1
Entity #3 | Chains: P
PORA P1.16 PEPTIDE FLUORESCEIN CONJUGATE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures