Sequence Similarity Clusters for the Entities in PDB 1MPA

Entity #1 | Chains: L
MN12H2 IGG2A-KAPPA protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28036
95 % 96 146 149 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 104 156 149
70 % 1234 2392 1
50 % 2521 4843 1
40 % 2521 4843 1
30 % 2883 5705 1
Entity #2 | Chains: H
MN12H2 IGG2A-KAPPA protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27902
95 % 1 3 23277 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.0
PDBFlex
90 % 1 3 22563
70 % 1223 2342 2
50 % 2522 4843 1
40 % 2522 4843 1
30 % 2884 5705 1
Entity #3 | Chains: P
PORA P1.16 PEPTIDE FLUORESCEIN CONJUGATE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures