Sequence Similarity Clusters for the Entities in PDB 1MPA

Entity #1 | Chains: L
MN12H2 IGG2A-KAPPA protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27616
95 % 96 146 145 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 104 156 146
70 % 1191 2327 1
50 % 2435 4713 1
40 % 2435 4713 1
30 % 2790 5567 1
Entity #2 | Chains: H
MN12H2 IGG2A-KAPPA protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27482
95 % 1 3 22936 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.0
PDBFlex
90 % 1 3 22246
70 % 1182 2280 2
50 % 2436 4713 1
40 % 2436 4713 1
30 % 2791 5567 1
Entity #3 | Chains: P
PORA P1.16 PEPTIDE FLUORESCEIN CONJUGATE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.