Sequence Similarity Clusters for the Entities in PDB 1MNU

Entity #1 | Chains: L
PROTEIN (IGG2A-KAPPA ANTIBODY MN12H2 (LIGHT CHAIN)) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28258
95 % 114 148 148 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 122 158 146
70 % 1434 2426 1
50 % 2920 4913 1
40 % 2920 4913 1
30 % 3359 5780 1
Entity #2 | Chains: H
PROTEIN (IGG2A-KAPPA ANTIBODY MN12H2 (HEAVY CHAIN)) protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28123
95 % 3 3 23438 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.0
PDBFlex
90 % 3 3 22712
70 % 1410 2376 2
50 % 2921 4913 1
40 % 2921 4913 1
30 % 3360 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures