Sequence Similarity Clusters for the Entities in PDB 1MNU

Entity #1 | Chains: L
PROTEIN (IGG2A-KAPPA ANTIBODY MN12H2 (LIGHT CHAIN)) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 8363
95 % 111 147 153 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 122 162 147
70 % 1500 2553 1
50 % 3062 5180 1
40 % 3485 5834 1
30 % 4290 7269 1
Entity #2 | Chains: H
PROTEIN (IGG2A-KAPPA ANTIBODY MN12H2 (HEAVY CHAIN)) protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 25604
95 % 3 3 22595 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.0
PDBFlex
90 % 3 3 21880
70 % 1479 2511 2
50 % 3063 5180 1
40 % 3486 5834 1
30 % 4291 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures