Sequence Similarity Clusters for the Entities in PDB 1MNU

Entity #1 | Chains: L
PROTEIN (IGG2A-KAPPA ANTIBODY MN12H2 (LIGHT CHAIN)) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27431
95 % 114 145 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 122 155 150
70 % 1339 2287 1
50 % 2729 4633 1
40 % 2729 4633 1
30 % 3148 5461 1
Entity #2 | Chains: H
PROTEIN (IGG2A-KAPPA ANTIBODY MN12H2 (HEAVY CHAIN)) protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27297
95 % 3 3 22798 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.0
PDBFlex
90 % 3 3 22115
70 % 1321 2244 2
50 % 2730 4633 1
40 % 2730 4633 1
30 % 3149 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.