Sequence Similarity Clusters for the Entities in PDB 1MNU

Entity #1 | Chains: L
PROTEIN (IGG2A-KAPPA ANTIBODY MN12H2 (LIGHT CHAIN)) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27715
95 % 114 146 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 122 156 148
70 % 1379 2346 1
50 % 2810 4752 1
40 % 2810 4752 1
30 % 3239 5606 1
Entity #2 | Chains: H
PROTEIN (IGG2A-KAPPA ANTIBODY MN12H2 (HEAVY CHAIN)) protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27581
95 % 3 3 23023 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.0
PDBFlex
90 % 3 3 22328
70 % 1358 2299 2
50 % 2811 4752 1
40 % 2811 4752 1
30 % 3240 5606 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.