Sequence Similarity Clusters for the Entities in PDB 1MNU

Entity #1 | Chains: L
PROTEIN (IGG2A-KAPPA ANTIBODY MN12H2 (LIGHT CHAIN)) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26947
95 % 114 145 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 122 155 149
70 % 1327 2264 1
50 % 2706 4587 1
40 % 2706 4587 1
30 % 3114 5392 1
Entity #2 | Chains: H
PROTEIN (IGG2A-KAPPA ANTIBODY MN12H2 (HEAVY CHAIN)) protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26815
95 % 3 3 22368 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 3 3 21707
70 % 1310 2222 2
50 % 2707 4587 1
40 % 2707 4587 1
30 % 3115 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.