Sequence Similarity Clusters for the Entities in PDB 1MNM

Entity #1 | Chains: E
DNA (STE6 OPERATOR DNA) dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
DNA (STE6 OPERATOR DNA) dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42917
95 % 1 1 36070 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 1 34420
70 % 1 1 30599
50 % 1 1 26126
40 % 1 1 22953
30 % 1 1 19156
Entity #4 | Chains: C,D
PROTEIN (MAT ALPHA-2 TRANSCRIPTIONAL REPRESSOR) protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42919
95 % 1 1 36072 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 6.7
PDBFlex
90 % 1 1 34422
70 % 1 1 30601
50 % 1 1 26127
40 % 1 1 22954
30 % 1 1 19157

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1MNM 4 C, D PROTEIN (MAT ALPHA-2 TRANSCRIPTIONAL REPRESSOR) RESIDUES 113 - 189 4932