Sequence Similarity Clusters for the Entities in PDB 1MNM

Entity #1 | Chains: E
DNA (STE6 OPERATOR DNA) dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
DNA (STE6 OPERATOR DNA) dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47726
95 % 1 1 35668 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 1 34065
70 % 1 1 30282
50 % 1 1 25852
40 % 1 1 22775
30 % 1 1 19283
Entity #4 | Chains: C,D
PROTEIN (MAT ALPHA-2 TRANSCRIPTIONAL REPRESSOR) protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48423
95 % 1 1 36145 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 6.7
PDBFlex
90 % 1 1 34513
70 % 1 1 30670
50 % 1 1 26212
40 % 1 1 23109
30 % 1 1 19573

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1MNM 4 C, D PROTEIN (MAT ALPHA-2 TRANSCRIPTIONAL REPRESSOR) RESIDUES 113 - 189 4932