Sequence Similarity Clusters for the Entities in PDB 1MNM

Entity #1 | Chains: E
DNA (STE6 OPERATOR DNA) dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
DNA (STE6 OPERATOR DNA) dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41995
95 % 1 1 35315 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 1 33719
70 % 1 1 30023
50 % 1 1 25611
40 % 1 1 22482
30 % 1 1 18765
Entity #4 | Chains: C,D
PROTEIN (MAT ALPHA-2 TRANSCRIPTIONAL REPRESSOR) protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41996
95 % 1 1 35316 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 6.7
PDBFlex
90 % 1 1 33720
70 % 1 1 30024
50 % 1 1 25612
40 % 1 1 22483
30 % 1 1 18766

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1MNM 3 A, B PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) RESIDUES 1 - 100 4932