Sequence Similarity Clusters for the Entities in PDB 1MNM

Entity #1 | Chains: E
DNA (STE6 OPERATOR DNA) dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
DNA (STE6 OPERATOR DNA) dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44772
95 % 1 1 33466
90 % 1 1 32031
70 % 1 1 28613
50 % 1 1 24517
40 % 1 1 21605
30 % 1 1 18289
Entity #4 | Chains: C,D
PROTEIN (MAT ALPHA-2 TRANSCRIPTIONAL REPRESSOR) protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 45440
95 % 1 1 33920
90 % 1 1 32456
70 % 1 1 28985
50 % 1 1 24860
40 % 1 1 21926
30 % 1 1 18566

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.