Sequence Similarity Clusters for the Entities in PDB 1MNM

Entity #1 | Chains: E
DNA (STE6 OPERATOR DNA) dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
DNA (STE6 OPERATOR DNA) dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48629
95 % 1 1 36296 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 1 34638
70 % 1 1 30773
50 % 1 1 26239
40 % 1 1 23120
30 % 1 1 19565
Entity #4 | Chains: C,D
PROTEIN (MAT ALPHA-2 TRANSCRIPTIONAL REPRESSOR) protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49335
95 % 1 1 36782 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 6.7
PDBFlex
90 % 1 1 35095
70 % 1 1 31169
50 % 1 1 26605
40 % 1 1 23460
30 % 1 1 19861

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures