Sequence Similarity Clusters for the Entities in PDB 1MMO

Entity #1 | Chains: B,C
METHANE MONOOXYGENASE HYDROLASE (BETA CHAIN) protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33972
95 % 11 27 897 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 11 27 934
70 % 11 27 968
50 % 12 29 982
40 % 12 29 1008
30 % 12 29 982
Entity #2 | Chains: D,E
METHANE MONOOXYGENASE HYDROLASE (ALPHA CHAIN) protein, length: 512 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17028
95 % 11 27 889 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 11 27 926
70 % 12 29 929
50 % 12 29 977
40 % 12 29 1005
30 % 12 29 979
Entity #3 | Chains: G,H
METHANE MONOOXYGENASE HYDROLASE (GAMMA CHAIN) protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22357
95 % 11 27 915 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 11 27 947
70 % 11 27 978
50 % 12 29 991
40 % 12 29 1018
30 % 12 29 992

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.