Sequence Similarity Clusters for the Entities in PDB 1MMO

Entity #1 | Chains: B,C
METHANE MONOOXYGENASE HYDROLASE (BETA CHAIN) protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 33501
95 % 11 27 886
90 % 11 27 920
70 % 11 27 953
50 % 12 29 967
40 % 12 29 992
30 % 12 29 962
Entity #2 | Chains: D,E
METHANE MONOOXYGENASE HYDROLASE (ALPHA CHAIN) protein, length: 512 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 16785
95 % 11 27 878
90 % 11 27 912
70 % 12 29 913
50 % 12 29 962
40 % 12 29 989
30 % 12 29 959
Entity #3 | Chains: G,H
METHANE MONOOXYGENASE HYDROLASE (GAMMA CHAIN) protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 22061
95 % 11 27 903
90 % 11 27 935
70 % 11 27 963
50 % 12 29 976
40 % 12 29 1002
30 % 12 29 970

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.