Sequence Similarity Clusters for the Entities in PDB 1MMF

Entity #1 | Chains: A,L
glycerol dehydrase alpha subunit protein, length: 555 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 16829
95 % 2 2 15560 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 2 15267
70 % 10 10 3029
50 % 10 10 2978
40 % 10 10 2939
30 % 10 10 2757
Entity #2 | Chains: B,E
glycerol dehydrase beta subunit protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41929
95 % 2 2 18813 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 2 2 18336
70 % 2 2 16930
50 % 2 2 14708
40 % 2 2 13101
30 % 2 2 11217
Entity #3 | Chains: G,M
glycerol dehydrase gamma subunit protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22904
95 % 2 2 19697 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 2 2 19169
70 % 2 2 17663
50 % 2 2 15343
40 % 2 2 13664
30 % 2 2 11693

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.