Sequence Similarity Clusters for the Entities in PDB 1MMF

Entity #1 | Chains: A,L
glycerol dehydrase alpha subunit protein, length: 555 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17512
95 % 2 2 16115 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 2 15812
70 % 10 10 3140
50 % 10 10 3085
40 % 10 10 3031
30 % 10 10 2843
Entity #2 | Chains: B,E
glycerol dehydrase beta subunit protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43409
95 % 2 2 19501 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 2 2 18983
70 % 2 2 17528
50 % 2 2 15201
40 % 2 2 13520
30 % 2 2 11565
Entity #3 | Chains: G,M
glycerol dehydrase gamma subunit protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23808
95 % 2 2 20401 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 2 2 19831
70 % 2 2 18277
50 % 2 2 15843
40 % 2 2 14089
30 % 2 2 12048

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures