Sequence Similarity Clusters for the Entities in PDB 1MLC

Entity #1 | Chains: A,C
IGG1-KAPPA D44.1 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 21637
95 % 23 29 1634 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 27 37 1194
70 % 1063 2392 1
50 % 2170 4843 1
40 % 2170 4843 1
30 % 2443 5705 1
Entity #2 | Chains: B,D
IGG1-KAPPA D44.1 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28083
95 % 2 2 23406 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 6 13 3238
70 % 1050 2342 2
50 % 2171 4843 1
40 % 2171 4843 1
30 % 2444 5705 1
Entity #3 | Chains: E,F
HEN EGG WHITE LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 591 665 3
95 % 642 718 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 654 735 5
70 % 865 955 7
50 % 871 963 8
40 % 900 997 11
30 % 900 997 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures