Sequence Similarity Clusters for the Entities in PDB 1MLC

Entity #1 | Chains: A,C
IGG1-KAPPA D44.1 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 21039
95 % 24 31 1424 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 28 39 1088
70 % 1122 2519 1
50 % 2292 5107 1
40 % 2630 5756 1
30 % 3195 7175 1
Entity #2 | Chains: B,D
IGG1-KAPPA D44.1 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27548
95 % 2 2 24160 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 6 13 3372
70 % 1112 2478 2
50 % 2293 5107 1
40 % 2631 5756 1
30 % 3196 7175 1
Entity #3 | Chains: E,F
HEN EGG WHITE LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 641 717 3
95 % 657 734 3 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 669 751 5
70 % 882 974 7
50 % 888 982 8
40 % 917 1016 10
30 % 917 1016 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures