Sequence Similarity Clusters for the Entities in PDB 1MLB

Entity #1 | Chains: A
IGG1-KAPPA D44.1 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 21279
95 % 12 29 1613 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 15 37 1178
70 % 557 2327 1
50 % 1147 4713 1
40 % 1147 4713 1
30 % 1273 5567 1
Entity #2 | Chains: B
IGG1-KAPPA D44.1 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27663
95 % 1 2 23063 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 4 13 3188
70 % 555 2280 2
50 % 1148 4713 1
40 % 1148 4713 1
30 % 1274 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.