Sequence Similarity Clusters for the Entities in PDB 1MLB

Entity #1 | Chains: A
IGG1-KAPPA D44.1 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 20449
95 % 12 25 1809 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.6
PDBFlex
90 % 15 33 1273
70 % 434 1822 2
50 % 1096 4489 1
40 % 1096 4489 1
30 % 1213 5290 1
Entity #2 | Chains: B
IGG1-KAPPA D44.1 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26605
95 % 1 2 22184 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.0
PDBFlex
90 % 4 12 3468
70 % 530 2172 1
50 % 1097 4489 1
40 % 1097 4489 1
30 % 1214 5290 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.