Sequence Similarity Clusters for the Entities in PDB 1MLB

Entity #1 | Chains: A
IGG1-KAPPA D44.1 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 22181
95 % 13 31 1390 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 16 39 1077
70 % 609 2479 1
50 % 1254 5021 1
40 % 1254 5021 1
30 % 1422 5951 1
Entity #2 | Chains: B
IGG1-KAPPA D44.1 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28706
95 % 1 2 23895 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 4 13 3321
70 % 607 2429 2
50 % 1255 5021 1
40 % 1255 5021 1
30 % 1423 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures