Sequence Similarity Clusters for the Entities in PDB 1ML5

Entity #1 | Chains: A
30S 16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 271 34
95 % 267 271 48
90 % 267 271 53
70 % 267 271 63
50 % 410 417 30
40 % 410 417 42
30 % 412 419 60
Entity #11 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 270 276 27
95 % 276 282 37
90 % 276 282 42
70 % 276 282 51
50 % 276 282 88
40 % 276 282 110
30 % 349 355 95
Entity #12 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 275 28
95 % 269 276 41
90 % 269 276 46
70 % 269 276 56
50 % 349 356 66
40 % 354 361 84
30 % 354 361 96
Entity #13 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 264 271 32
95 % 264 271 45
90 % 268 275 47
70 % 268 275 57
50 % 414 421 27
40 % 420 427 37
30 % 535 542 30
Entity #14 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 91 220
95 % 267 271 50
90 % 267 271 55
70 % 267 271 65
50 % 407 411 35
40 % 407 411 48
30 % 522 526 34
Entity #15 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 269 39
95 % 266 270 53
90 % 266 270 58
70 % 266 270 68
50 % 417 421 26
40 % 417 421 38
30 % 524 528 32
Entity #16 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 271 35
95 % 267 271 49
90 % 267 271 54
70 % 267 271 64
50 % 411 415 32
40 % 533 537 19
30 % 533 537 31
Entity #17 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 212 217 51
95 % 273 278 39
90 % 273 278 44
70 % 417 422 19
50 % 427 432 24
40 % 427 432 35
30 % 427 432 55
Entity #18 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 272 33
95 % 267 272 46
90 % 267 272 51
70 % 267 272 62
50 % 414 419 31
40 % 414 419 43
30 % 522 527 36
Entity #19 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 270 36
95 % 266 270 54
90 % 266 270 59
70 % 275 279 54
50 % 275 279 90
40 % 275 279 113
30 % 275 279 123
Entity #2 | Chains: B
T-RNA(PHE) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 274 30
95 % 273 279 38
90 % 273 279 43
70 % 273 279 53
50 % 421 428 25
40 % 426 433 34
30 % 426 433 54
Entity #21 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 15778
95 % 266 271 51
90 % 266 271 56
70 % 266 271 66
50 % 273 278 91
40 % 273 278 114
30 % 408 413 63
Entity #22 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 87 258
95 % 261 265 56
90 % 265 269 60
70 % 265 269 69
50 % 265 269 94
40 % 265 269 117
30 % 265 269 128
Entity #23 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 51 719
95 % 232 236 65
90 % 232 236 69
70 % 232 236 81
50 % 232 236 111
40 % 232 236 135
30 % 232 236 144
Entity #24 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 274 29
95 % 268 274 42
90 % 268 274 48
70 % 268 274 58
50 % 415 421 28
40 % 418 424 40
30 % 418 424 57
Entity #25 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 51 524
95 % 266 270 52
90 % 266 270 57
70 % 266 270 67
50 % 266 270 93
40 % 266 270 116
30 % 266 270 127
Entity #26 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 257 261 43
95 % 257 261 59
90 % 257 261 63
70 % 257 261 74
50 % 257 261 98
40 % 257 261 121
30 % 257 261 133
Entity #27 | Chains: c
50S RIBOSOMAL PROTEIN L1 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 29 953
95 % 87 90 266
90 % 88 91 279
70 % 88 91 315
50 % 141 144 231
40 % 141 144 252
30 % 193 196 207
Entity #28 | Chains: d
50S RIBOSOMAL PROTEIN L2 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 27922
95 % 5 6 12494
90 % 5 6 12296
70 % 5 6 11604
50 % 5 6 10361
40 % 5 6 9400
30 % 5 6 8189
Entity #29 | Chains: e
50S RIBOSOMAL PROTEIN L3 protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 11781
95 % 73 74 609
90 % 73 74 639
70 % 73 74 683
50 % 73 74 736
40 % 183 184 215
30 % 183 184 225
Entity #3 | Chains: C
A- AND P-SITE MESSENGER RNA CODONS rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: f
50S RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 10234
95 % 73 74 613
90 % 73 74 643
70 % 73 74 685
50 % 73 74 738
40 % 75 76 751
30 % 77 78 727
Entity #31 | Chains: g
50S RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 446
95 % 73 74 618
90 % 73 74 646
70 % 73 74 688
50 % 73 74 741
40 % 183 184 216
30 % 183 184 226
Entity #32 | Chains: h
50S RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 6454
95 % 6 10 7055
90 % 6 10 7024
70 % 10 14 4662
50 % 205 209 113
40 % 344 348 70
30 % 526 530 35
Entity #33 | Chains: l
50S RIBOSOMAL PROTEIN L11 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 19 2505
95 % 14 21 2805
90 % 14 21 2847
70 % 17 24 2371
50 % 222 229 137
40 % 225 232 151
30 % 228 235 164
Entity #34 | Chains: m
50S RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 449
95 % 73 74 620
90 % 73 74 648
70 % 73 74 693
50 % 73 74 747
40 % 76 77 745
30 % 77 78 731
Entity #35 | Chains: n
50S RIBOSOMAL PROTEIN L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 7309
95 % 6 9 7876
90 % 6 9 7829
70 % 204 207 84
50 % 352 355 54
40 % 536 539 20
30 % 536 539 33
Entity #36 | Chains: o
50S RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 447
95 % 73 74 619
90 % 73 74 647
70 % 73 74 690
50 % 73 74 743
40 % 73 74 778
30 % 518 519 37
Entity #37 | Chains: p
50S RIBOSOMAL PROTEIN L16 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 13406
95 % 5 6 12785
90 % 6 7 10352
70 % 26 27 2210
50 % 73 74 742
40 % 78 79 723
30 % 78 79 719
Entity #38 | Chains: q
50S RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 445
95 % 73 74 617
90 % 73 74 645
70 % 73 74 687
50 % 75 76 718
40 % 75 76 753
30 % 78 79 717
Entity #39 | Chains: r
50S RIBOSOMAL PROTEIN L19 protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 70 483
95 % 69 70 668
90 % 69 70 694
70 % 69 70 746
50 % 69 70 795
40 % 69 70 832
30 % 69 70 819
Entity #4 | Chains: a
50S 23S RIBOSOMAL RNA rna, length: 2916 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #40 | Chains: s
50S RIBOSOMAL PROTEIN L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 162 60
95 % 162 163 79
90 % 162 163 84
70 % 162 163 104
50 % 317 318 75
40 % 317 318 91
30 % 319 320 104
Entity #41 | Chains: t
50S RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 452
95 % 73 74 623
90 % 73 74 651
70 % 73 74 697
50 % 75 76 723
40 % 77 78 734
30 % 421 422 59
Entity #42 | Chains: u
50S RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 451
95 % 73 74 622
90 % 73 74 650
70 % 73 74 695
50 % 182 183 199
40 % 183 184 217
30 % 183 184 227
Entity #43 | Chains: v
50S RIBOSOMAL PROTEIN L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 141 145 114
95 % 141 145 155
90 % 141 145 166
70 % 141 145 185
50 % 142 146 222
40 % 142 146 242
30 % 142 146 251
Entity #44 | Chains: w
50S RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 453
95 % 73 74 624
90 % 73 74 652
70 % 73 74 698
50 % 73 74 748
40 % 383 384 58
30 % 409 410 65
Entity #45 | Chains: x
50S RIBOSOMAL PROTEIN L30 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 161 59
95 % 160 161 82
90 % 160 161 86
70 % 160 161 106
50 % 160 161 142
40 % 341 342 77
30 % 341 342 89
Entity #5 | Chains: b
50S 5S RIBOSOMAL RNA rna, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: Z
Peptide chain release factor 2 protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 6011
95 % 12 13 4281
90 % 12 13 4309
70 % 12 13 4229
50 % 12 13 4084
40 % 29 30 1309
30 % 29 30 1286
Entity #7 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 271 31
95 % 268 272 43
90 % 268 272 49
70 % 268 272 59
50 % 405 409 36
40 % 410 414 45
30 % 410 414 62
Entity #8 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 231 235 48
95 % 231 235 66
90 % 231 235 70
70 % 231 235 82
50 % 305 309 84
40 % 305 309 103
30 % 305 309 116
Entity #9 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 9009
95 % 268 272 44
90 % 268 272 50
70 % 268 272 60
50 % 412 416 29
40 % 417 421 41
30 % 417 421 58

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.