Sequence Similarity Clusters for the Entities in PDB 1ML5

Entity #1 | Chains: A
30S 16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 270 34
95 % 266 270 48
90 % 266 270 53
70 % 266 270 63
50 % 408 415 29
40 % 408 415 42
30 % 410 417 60
Entity #11 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 275 27
95 % 275 281 37
90 % 275 281 41
70 % 275 281 52
50 % 275 281 88
40 % 275 281 109
30 % 346 352 93
Entity #12 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 274 28
95 % 268 275 41
90 % 268 275 46
70 % 268 275 57
50 % 346 353 68
40 % 351 358 85
30 % 351 358 95
Entity #13 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 263 270 32
95 % 263 270 46
90 % 267 274 47
70 % 267 274 58
50 % 411 418 27
40 % 417 424 37
30 % 528 535 30
Entity #14 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 91 217
95 % 266 270 50
90 % 266 270 55
70 % 266 270 65
50 % 405 409 34
40 % 405 409 47
30 % 513 517 35
Entity #15 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 264 268 39
95 % 265 269 53
90 % 265 269 58
70 % 265 269 68
50 % 414 418 26
40 % 414 418 38
30 % 518 522 31
Entity #16 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 270 35
95 % 266 270 49
90 % 266 270 54
70 % 266 270 64
50 % 408 412 33
40 % 518 522 19
30 % 518 522 32
Entity #17 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 212 217 51
95 % 272 277 40
90 % 272 277 45
70 % 414 419 20
50 % 424 429 24
40 % 424 429 36
30 % 424 429 55
Entity #18 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 271 33
95 % 266 271 47
90 % 266 271 52
70 % 266 271 62
50 % 411 416 31
40 % 411 416 44
30 % 515 520 34
Entity #19 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 269 38
95 % 265 269 54
90 % 265 269 59
70 % 273 277 56
50 % 273 277 91
40 % 273 277 115
30 % 273 277 123
Entity #2 | Chains: B
T-RNA(PHE) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 273 30
95 % 272 278 38
90 % 272 278 43
70 % 272 278 54
50 % 418 425 25
40 % 423 430 35
30 % 423 430 54
Entity #21 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 15513
95 % 265 270 51
90 % 265 270 56
70 % 265 270 66
50 % 272 277 90
40 % 272 277 114
30 % 406 411 63
Entity #22 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 87 251
95 % 260 264 56
90 % 264 268 60
70 % 264 268 69
50 % 264 268 93
40 % 264 268 117
30 % 264 268 128
Entity #23 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 51 705
95 % 231 235 65
90 % 231 235 70
70 % 231 235 83
50 % 231 235 111
40 % 231 235 135
30 % 231 235 143
Entity #24 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 273 29
95 % 267 273 42
90 % 267 273 48
70 % 267 273 59
50 % 412 418 28
40 % 415 421 39
30 % 415 421 56
Entity #25 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 51 505
95 % 265 269 52
90 % 265 269 57
70 % 265 269 67
50 % 265 269 92
40 % 265 269 116
30 % 265 269 127
Entity #26 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 256 260 43
95 % 256 260 59
90 % 256 260 63
70 % 256 260 75
50 % 256 260 98
40 % 256 260 121
30 % 256 260 132
Entity #27 | Chains: c
50S RIBOSOMAL PROTEIN L1 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 29 939
95 % 87 90 263
90 % 88 91 275
70 % 88 91 305
50 % 141 144 229
40 % 141 144 252
30 % 193 196 204
Entity #28 | Chains: d
50S RIBOSOMAL PROTEIN L2 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 27406
95 % 5 6 12281
90 % 5 6 12081
70 % 5 6 11363
50 % 5 6 10163
40 % 5 6 9214
30 % 5 6 8023
Entity #29 | Chains: e
50S RIBOSOMAL PROTEIN L3 protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 11606
95 % 73 74 593
90 % 73 74 624
70 % 73 74 662
50 % 73 74 708
40 % 180 181 217
30 % 180 181 225
Entity #3 | Chains: C
A- AND P-SITE MESSENGER RNA CODONS rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: f
50S RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 10078
95 % 73 74 597
90 % 73 74 628
70 % 73 74 664
50 % 73 74 710
40 % 75 76 719
30 % 77 78 693
Entity #31 | Chains: g
50S RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 430
95 % 73 74 602
90 % 73 74 631
70 % 73 74 667
50 % 73 74 712
40 % 180 181 218
30 % 180 181 226
Entity #32 | Chains: h
50S RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 6345
95 % 6 10 6924
90 % 6 10 6895
70 % 10 14 4576
50 % 201 205 115
40 % 339 343 70
30 % 518 522 36
Entity #33 | Chains: l
50S RIBOSOMAL PROTEIN L11 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 19 2466
95 % 14 21 2765
90 % 14 21 2807
70 % 17 24 2324
50 % 221 228 136
40 % 224 231 149
30 % 227 234 164
Entity #34 | Chains: m
50S RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 432
95 % 73 74 604
90 % 73 74 633
70 % 73 74 672
50 % 73 74 718
40 % 76 77 714
30 % 77 78 697
Entity #35 | Chains: n
50S RIBOSOMAL PROTEIN L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 7195
95 % 6 9 7738
90 % 6 9 7692
70 % 200 203 85
50 % 347 350 53
40 % 528 531 20
30 % 528 531 33
Entity #36 | Chains: o
50S RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 431
95 % 73 74 603
90 % 73 74 632
70 % 73 74 669
50 % 73 74 714
40 % 73 74 747
30 % 510 511 37
Entity #37 | Chains: p
50S RIBOSOMAL PROTEIN L16 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 13189
95 % 5 6 12564
90 % 6 7 10170
70 % 26 27 2169
50 % 73 74 713
40 % 78 79 691
30 % 78 79 688
Entity #38 | Chains: q
50S RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 429
95 % 73 74 601
90 % 73 74 630
70 % 73 74 666
50 % 75 76 688
40 % 75 76 721
30 % 78 79 686
Entity #39 | Chains: r
50S RIBOSOMAL PROTEIN L19 protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 70 464
95 % 69 70 653
90 % 69 70 679
70 % 69 70 733
50 % 69 70 779
40 % 69 70 812
30 % 69 70 802
Entity #4 | Chains: a
50S 23S RIBOSOMAL RNA rna, length: 2916 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #40 | Chains: s
50S RIBOSOMAL PROTEIN L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 161 61
95 % 161 162 80
90 % 161 162 85
70 % 161 162 105
50 % 314 315 73
40 % 314 315 90
30 % 316 317 103
Entity #41 | Chains: t
50S RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 436
95 % 73 74 608
90 % 73 74 637
70 % 73 74 677
50 % 75 76 692
40 % 77 78 701
30 % 416 417 61
Entity #42 | Chains: u
50S RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 435
95 % 73 74 607
90 % 73 74 636
70 % 73 74 675
50 % 180 181 200
40 % 180 181 219
30 % 180 181 227
Entity #43 | Chains: v
50S RIBOSOMAL PROTEIN L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 144 113
95 % 140 144 155
90 % 140 144 165
70 % 140 144 186
50 % 141 145 220
40 % 141 145 243
30 % 141 145 252
Entity #44 | Chains: w
50S RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 437
95 % 73 74 609
90 % 73 74 638
70 % 73 74 678
50 % 73 74 722
40 % 380 381 58
30 % 406 407 65
Entity #45 | Chains: x
50S RIBOSOMAL PROTEIN L30 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 159 160 60
95 % 159 160 81
90 % 159 160 86
70 % 159 160 106
50 % 159 160 142
40 % 338 339 72
30 % 338 339 86
Entity #5 | Chains: b
50S 5S RIBOSOMAL RNA rna, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: Z
Peptide chain release factor 2 protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 5912
95 % 12 13 4207
90 % 12 13 4232
70 % 12 13 4139
50 % 12 13 4016
40 % 29 30 1283
30 % 29 30 1265
Entity #7 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 270 31
95 % 267 271 44
90 % 267 271 50
70 % 267 271 60
50 % 403 407 35
40 % 408 412 43
30 % 408 412 62
Entity #8 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 230 234 48
95 % 230 234 66
90 % 230 234 71
70 % 230 234 84
50 % 304 308 84
40 % 304 308 103
30 % 304 308 115
Entity #9 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 8880
95 % 267 271 45
90 % 267 271 51
70 % 267 271 61
50 % 409 413 30
40 % 414 418 40
30 % 414 418 57

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.