Sequence Similarity Clusters for the Entities in PDB 1ML5

Entity #1 | Chains: A
30S 16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 269 34
95 % 265 269 46
90 % 265 269 49
70 % 265 269 59
50 % 387 394 29
40 % 387 394 41
30 % 389 396 58
Entity #11 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 274 26
95 % 274 280 33
90 % 274 280 38
70 % 274 280 49
50 % 274 280 83
40 % 274 280 102
30 % 328 334 88
Entity #12 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 273 27
95 % 267 274 38
90 % 267 274 42
70 % 267 274 52
50 % 329 336 65
40 % 332 339 76
30 % 332 339 91
Entity #13 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 262 269 32
95 % 262 269 43
90 % 266 273 43
70 % 266 273 53
50 % 388 395 26
40 % 392 399 35
30 % 497 504 28
Entity #14 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 91 203
95 % 265 269 48
90 % 265 269 51
70 % 265 269 61
50 % 385 389 35
40 % 385 389 45
30 % 488 492 34
Entity #15 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 263 267 37
95 % 264 268 51
90 % 264 268 54
70 % 264 268 65
50 % 391 395 25
40 % 391 395 37
30 % 490 494 30
Entity #16 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 269 35
95 % 265 269 47
90 % 265 269 50
70 % 265 269 60
50 % 385 389 34
40 % 487 491 18
30 % 487 491 31
Entity #17 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 212 217 48
95 % 271 276 36
90 % 271 276 40
70 % 397 402 20
50 % 402 407 23
40 % 402 407 33
30 % 402 407 54
Entity #18 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 270 33
95 % 265 270 44
90 % 265 270 48
70 % 265 270 57
50 % 389 394 31
40 % 389 394 43
30 % 490 495 33
Entity #19 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 264 268 36
95 % 264 268 52
90 % 264 268 55
70 % 266 270 58
50 % 266 270 87
40 % 266 270 108
30 % 266 270 120
Entity #2 | Chains: B
T-RNA(PHE) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 272 29
95 % 271 277 35
90 % 271 277 39
70 % 271 277 50
50 % 395 402 24
40 % 398 405 34
30 % 398 405 55
Entity #21 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 14869
95 % 264 269 49
90 % 264 269 52
70 % 264 269 62
50 % 266 271 86
40 % 266 271 106
30 % 385 390 63
Entity #22 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 87 235
95 % 259 263 53
90 % 263 267 56
70 % 263 267 66
50 % 263 267 90
40 % 263 267 111
30 % 263 267 123
Entity #23 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 51 665
95 % 230 234 62
90 % 230 234 66
70 % 230 234 77
50 % 230 234 103
40 % 230 234 129
30 % 230 234 140
Entity #24 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 272 28
95 % 266 272 40
90 % 266 272 45
70 % 266 272 54
50 % 388 394 28
40 % 391 397 38
30 % 391 397 56
Entity #25 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 51 464
95 % 264 268 50
90 % 264 268 53
70 % 264 268 64
50 % 264 268 89
40 % 264 268 110
30 % 264 268 122
Entity #26 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 259 42
95 % 255 259 56
90 % 255 259 60
70 % 255 259 69
50 % 255 259 94
40 % 255 259 116
30 % 255 259 129
Entity #27 | Chains: c
50S RIBOSOMAL PROTEIN L1 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 29 893
95 % 87 90 247
90 % 88 91 255
70 % 88 91 287
50 % 133 136 224
40 % 133 136 252
30 % 184 187 203
Entity #28 | Chains: d
50S RIBOSOMAL PROTEIN L2 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 26397
95 % 5 6 11788
90 % 5 6 11606
70 % 5 6 10920
50 % 5 6 9797
40 % 5 6 8873
30 % 5 6 7743
Entity #29 | Chains: e
50S RIBOSOMAL PROTEIN L3 protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 11114
95 % 73 74 552
90 % 73 74 582
70 % 73 74 615
50 % 73 74 666
40 % 177 178 205
30 % 177 178 218
Entity #3 | Chains: C
A- AND P-SITE MESSENGER RNA CODONS rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: f
50S RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 9655
95 % 73 74 556
90 % 73 74 586
70 % 73 74 619
50 % 73 74 668
40 % 75 76 691
30 % 77 78 674
Entity #31 | Chains: g
50S RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 402
95 % 73 74 562
90 % 73 74 590
70 % 73 74 621
50 % 73 74 670
40 % 177 178 207
30 % 177 178 220
Entity #32 | Chains: h
50S RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 6019
95 % 6 10 6586
90 % 6 10 6572
70 % 9 13 4687
50 % 190 194 114
40 % 317 321 66
30 % 493 497 32
Entity #33 | Chains: l
50S RIBOSOMAL PROTEIN L11 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 19 2351
95 % 14 21 2651
90 % 14 21 2696
70 % 17 24 2238
50 % 208 215 137
40 % 211 218 150
30 % 214 221 164
Entity #34 | Chains: m
50S RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 404
95 % 73 74 564
90 % 73 74 592
70 % 73 74 626
50 % 73 74 676
40 % 76 77 681
30 % 77 78 677
Entity #35 | Chains: n
50S RIBOSOMAL PROTEIN L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 6856
95 % 6 9 7384
90 % 6 9 7349
70 % 15 18 3389
50 % 325 328 53
40 % 329 332 61
30 % 503 506 29
Entity #36 | Chains: o
50S RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 403
95 % 73 74 563
90 % 73 74 591
70 % 73 74 623
50 % 73 74 672
40 % 73 74 711
30 % 487 488 35
Entity #37 | Chains: p
50S RIBOSOMAL PROTEIN L16 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 12651
95 % 5 6 12072
90 % 6 7 9757
70 % 26 27 2078
50 % 73 74 671
40 % 78 79 658
30 % 78 79 668
Entity #38 | Chains: q
50S RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 401
95 % 73 74 561
90 % 73 74 589
70 % 73 74 620
50 % 75 76 651
40 % 75 76 693
30 % 78 79 665
Entity #39 | Chains: r
50S RIBOSOMAL PROTEIN L19 protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 70 434
95 % 69 70 615
90 % 69 70 641
70 % 69 70 680
50 % 69 70 731
40 % 69 70 769
30 % 69 70 767
Entity #4 | Chains: a
50S 23S RIBOSOMAL RNA rna, length: 2916 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #40 | Chains: s
50S RIBOSOMAL PROTEIN L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 159 160 58
95 % 160 161 77
90 % 160 161 81
70 % 160 161 98
50 % 296 297 72
40 % 296 297 87
30 % 298 299 103
Entity #41 | Chains: t
50S RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 410
95 % 73 74 569
90 % 73 74 596
70 % 73 74 630
50 % 75 76 654
40 % 77 78 670
30 % 396 397 57
Entity #42 | Chains: u
50S RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 407
95 % 73 74 566
90 % 73 74 594
70 % 73 74 628
50 % 177 178 191
40 % 177 178 208
30 % 177 178 221
Entity #43 | Chains: v
50S RIBOSOMAL PROTEIN L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 129 133 109
95 % 129 133 153
90 % 129 133 163
70 % 129 133 184
50 % 130 134 219
40 % 130 134 245
30 % 130 134 254
Entity #44 | Chains: w
50S RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 412
95 % 73 74 570
90 % 73 74 597
70 % 73 74 631
50 % 73 74 678
40 % 73 74 715
30 % 73 74 715
Entity #45 | Chains: x
50S RIBOSOMAL PROTEIN L30 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 159 57
95 % 158 159 78
90 % 158 159 82
70 % 158 159 99
50 % 158 159 136
40 % 318 319 67
30 % 318 319 81
Entity #5 | Chains: b
50S 5S RIBOSOMAL RNA rna, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: Z
Peptide chain release factor 2 protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 7552
95 % 10 11 4636
90 % 10 11 4649
70 % 10 11 4567
50 % 10 11 4405
40 % 27 28 1300
30 % 27 28 1277
Entity #7 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 269 31
95 % 266 270 41
90 % 266 270 46
70 % 266 270 55
50 % 384 388 33
40 % 387 391 42
30 % 387 391 61
Entity #8 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 229 233 45
95 % 229 233 63
90 % 229 233 67
70 % 229 233 78
50 % 298 302 79
40 % 298 302 96
30 % 298 302 113
Entity #9 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 8484
95 % 266 270 42
90 % 266 270 47
70 % 266 270 56
50 % 386 390 30
40 % 389 393 40
30 % 389 393 59

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.