Sequence Similarity Clusters for the Entities in PDB 1ML5

Entity #1 | Chains: A
30S 16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 271 35
95 % 267 271 49
90 % 267 271 53
70 % 267 271 64
50 % 416 423 30
40 % 416 423 43
30 % 418 425 61
Entity #11 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 270 276 27
95 % 276 282 37
90 % 276 282 42
70 % 276 282 53
50 % 276 282 90
40 % 276 282 112
30 % 356 362 94
Entity #12 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 275 28
95 % 269 276 42
90 % 269 276 46
70 % 269 276 57
50 % 356 363 66
40 % 361 368 82
30 % 361 368 96
Entity #13 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 264 271 32
95 % 264 271 46
90 % 268 275 47
70 % 268 275 58
50 % 421 428 27
40 % 427 434 37
30 % 545 552 30
Entity #14 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 91 224
95 % 267 271 51
90 % 267 271 55
70 % 267 271 66
50 % 413 417 33
40 % 413 417 46
30 % 532 536 34
Entity #15 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 269 40
95 % 266 270 54
90 % 266 270 58
70 % 266 270 69
50 % 424 428 26
40 % 424 428 38
30 % 532 536 32
Entity #16 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 271 36
95 % 267 271 50
90 % 267 271 54
70 % 267 271 65
50 % 418 422 32
40 % 543 547 19
30 % 543 547 31
Entity #17 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 212 217 53
95 % 273 278 39
90 % 273 278 44
70 % 421 426 19
50 % 434 439 24
40 % 434 439 36
30 % 434 439 57
Entity #18 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 272 33
95 % 267 272 47
90 % 267 272 51
70 % 267 272 63
50 % 421 426 31
40 % 421 426 44
30 % 531 536 35
Entity #19 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 270 37
95 % 266 270 55
90 % 266 270 59
70 % 279 283 54
50 % 279 283 91
40 % 279 283 113
30 % 279 283 125
Entity #2 | Chains: B
T-RNA(PHE) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 274 30
95 % 273 279 38
90 % 273 279 43
70 % 273 279 55
50 % 428 435 25
40 % 433 440 35
30 % 433 440 56
Entity #21 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 16015
95 % 266 271 52
90 % 266 271 56
70 % 266 271 67
50 % 276 281 92
40 % 276 281 114
30 % 414 419 64
Entity #22 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 87 262
95 % 261 265 56
90 % 265 269 60
70 % 265 269 70
50 % 265 269 95
40 % 265 269 117
30 % 265 269 128
Entity #23 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 51 731
95 % 232 236 65
90 % 232 236 69
70 % 232 236 81
50 % 232 236 115
40 % 232 236 138
30 % 232 236 146
Entity #24 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 274 29
95 % 268 274 43
90 % 268 274 48
70 % 268 274 59
50 % 422 428 28
40 % 425 431 40
30 % 425 431 58
Entity #25 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 51 530
95 % 266 270 53
90 % 266 270 57
70 % 266 270 68
50 % 266 270 94
40 % 266 270 116
30 % 266 270 127
Entity #26 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 257 261 43
95 % 257 261 59
90 % 257 261 63
70 % 257 261 74
50 % 257 261 100
40 % 257 261 123
30 % 257 261 135
Entity #27 | Chains: c
50S RIBOSOMAL PROTEIN L1 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 29 975
95 % 87 90 272
90 % 88 91 284
70 % 88 91 319
50 % 141 144 237
40 % 141 144 261
30 % 193 196 211
Entity #28 | Chains: d
50S RIBOSOMAL PROTEIN L2 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 28294
95 % 5 6 12686
90 % 5 6 12474
70 % 5 6 11746
50 % 5 6 10480
40 % 5 6 9502
30 % 5 6 8285
Entity #29 | Chains: e
50S RIBOSOMAL PROTEIN L3 protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 11979
95 % 73 74 617
90 % 73 74 648
70 % 73 74 692
50 % 73 74 745
40 % 183 184 218
30 % 183 184 227
Entity #3 | Chains: C
A- AND P-SITE MESSENGER RNA CODONS rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: f
50S RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 10391
95 % 73 74 620
90 % 73 74 651
70 % 73 74 694
50 % 73 74 747
40 % 75 76 759
30 % 77 78 738
Entity #31 | Chains: g
50S RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 450
95 % 73 74 626
90 % 73 74 655
70 % 73 74 698
50 % 73 74 752
40 % 183 184 219
30 % 183 184 229
Entity #32 | Chains: h
50S RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 6548
95 % 6 10 7157
90 % 6 10 7119
70 % 10 14 4731
50 % 209 213 116
40 % 348 352 69
30 % 530 534 36
Entity #33 | Chains: l
50S RIBOSOMAL PROTEIN L11 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 19 2560
95 % 14 21 2855
90 % 14 21 2897
70 % 17 24 2400
50 % 222 229 143
40 % 225 232 154
30 % 228 235 166
Entity #34 | Chains: m
50S RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 453
95 % 73 74 628
90 % 73 74 657
70 % 73 74 703
50 % 73 74 758
40 % 76 77 751
30 % 77 78 742
Entity #35 | Chains: n
50S RIBOSOMAL PROTEIN L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 7410
95 % 6 9 7988
90 % 6 9 7933
70 % 208 211 85
50 % 356 359 52
40 % 540 543 20
30 % 540 543 33
Entity #36 | Chains: o
50S RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 451
95 % 73 74 627
90 % 73 74 656
70 % 73 74 700
50 % 73 74 754
40 % 73 74 790
30 % 522 523 37
Entity #37 | Chains: p
50S RIBOSOMAL PROTEIN L16 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 13624
95 % 5 6 12980
90 % 6 7 10490
70 % 26 27 2233
50 % 73 74 753
40 % 78 79 729
30 % 78 79 726
Entity #38 | Chains: q
50S RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 449
95 % 73 74 625
90 % 73 74 654
70 % 73 74 697
50 % 75 76 727
40 % 75 76 762
30 % 78 79 724
Entity #39 | Chains: r
50S RIBOSOMAL PROTEIN L19 protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 70 488
95 % 69 70 678
90 % 69 70 704
70 % 69 70 760
50 % 69 70 808
40 % 69 70 845
30 % 69 70 830
Entity #4 | Chains: a
50S 23S RIBOSOMAL RNA rna, length: 2916 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #40 | Chains: s
50S RIBOSOMAL PROTEIN L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 162 61
95 % 162 163 85
90 % 162 163 90
70 % 162 163 108
50 % 320 321 76
40 % 320 321 93
30 % 322 323 105
Entity #41 | Chains: t
50S RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 456
95 % 73 74 631
90 % 73 74 660
70 % 73 74 707
50 % 75 76 733
40 % 77 78 742
30 % 425 426 60
Entity #42 | Chains: u
50S RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 455
95 % 73 74 630
90 % 73 74 659
70 % 73 74 705
50 % 182 183 201
40 % 183 184 220
30 % 183 184 230
Entity #43 | Chains: v
50S RIBOSOMAL PROTEIN L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 141 145 114
95 % 141 145 158
90 % 141 145 169
70 % 141 145 190
50 % 142 146 227
40 % 142 146 246
30 % 142 146 253
Entity #44 | Chains: w
50S RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 457
95 % 73 74 632
90 % 73 74 661
70 % 73 74 708
50 % 73 74 759
40 % 386 387 53
30 % 412 413 65
Entity #45 | Chains: x
50S RIBOSOMAL PROTEIN L30 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 161 60
95 % 160 161 86
90 % 160 161 91
70 % 160 161 109
50 % 160 161 147
40 % 347 348 72
30 % 347 348 86
Entity #5 | Chains: b
50S 5S RIBOSOMAL RNA rna, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: Z
Peptide chain release factor 2 protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 6099
95 % 12 13 4348
90 % 12 13 4374
70 % 12 13 4290
50 % 12 13 4136
40 % 29 30 1324
30 % 29 30 1300
Entity #7 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 271 31
95 % 268 272 44
90 % 268 272 49
70 % 268 272 60
50 % 411 415 34
40 % 416 420 45
30 % 416 420 62
Entity #8 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 231 235 49
95 % 231 235 66
90 % 231 235 70
70 % 231 235 82
50 % 305 309 85
40 % 305 309 103
30 % 305 309 118
Entity #9 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 9139
95 % 268 272 45
90 % 268 272 50
70 % 268 272 61
50 % 419 423 29
40 % 424 428 42
30 % 424 428 59

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.