Sequence Similarity Clusters for the Entities in PDB 1ML5

Entity #1 | Chains: A
30S 16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 291 295 36
95 % 291 295 45
90 % 291 295 49
70 % 291 295 61
50 % 452 459 31
40 % 452 459 44
30 % 454 461 60
Entity #11 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 294 300 28
95 % 300 306 35
90 % 300 306 39
70 % 300 306 50
50 % 300 306 90
40 % 300 306 111
30 % 389 395 86
Entity #12 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 293 300 29
95 % 293 300 38
90 % 293 300 42
70 % 293 300 52
50 % 390 397 54
40 % 396 403 67
30 % 396 403 81
Entity #13 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 288 295 35
95 % 288 295 43
90 % 292 299 43
70 % 292 299 53
50 % 456 463 27
40 % 591 598 18
30 % 591 598 31
Entity #14 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 96 229
95 % 291 295 47
90 % 291 295 51
70 % 291 295 63
50 % 448 452 34
40 % 449 453 48
30 % 578 582 35
Entity #15 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 290 294 40
95 % 290 294 49
90 % 290 294 53
70 % 290 294 64
50 % 460 464 25
40 % 575 579 20
30 % 577 581 33
Entity #16 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 291 295 37
95 % 291 295 46
90 % 291 295 50
70 % 291 295 62
50 % 454 458 32
40 % 581 585 19
30 % 581 585 32
Entity #17 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 258 263 49
95 % 297 302 37
90 % 297 302 41
70 % 467 472 15
50 % 470 475 24
40 % 470 475 38
30 % 470 475 55
Entity #18 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 291 296 34
95 % 291 296 42
90 % 291 296 47
70 % 291 296 59
50 % 457 462 30
40 % 457 462 43
30 % 577 582 36
Entity #19 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 290 294 39
95 % 290 294 48
90 % 290 294 52
70 % 294 298 55
50 % 303 307 91
40 % 303 307 112
30 % 303 307 126
Entity #2 | Chains: B
T-RNA(PHE) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 294 300 27
95 % 297 303 36
90 % 297 303 40
70 % 297 303 51
50 % 463 470 26
40 % 468 475 37
30 % 468 475 54
Entity #21 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 15295
95 % 290 295 44
90 % 290 295 48
70 % 290 295 60
50 % 300 305 92
40 % 455 460 45
30 % 455 460 61
Entity #22 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 262 266 46
95 % 288 292 51
90 % 288 292 55
70 % 288 292 67
50 % 288 292 95
40 % 288 292 117
30 % 288 292 132
Entity #23 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 239 243 54
95 % 245 249 64
90 % 245 249 68
70 % 245 249 85
50 % 245 249 116
40 % 245 249 138
30 % 245 249 150
Entity #24 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 292 298 30
95 % 292 298 39
90 % 292 298 44
70 % 292 298 54
50 % 458 464 28
40 % 461 467 41
30 % 461 467 58
Entity #25 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 251 255 50
95 % 290 294 50
90 % 290 294 54
70 % 290 294 65
50 % 290 294 94
40 % 290 294 116
30 % 290 294 131
Entity #26 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 281 285 44
95 % 281 285 54
90 % 281 285 59
70 % 281 285 71
50 % 281 285 100
40 % 281 285 121
30 % 281 285 135
Entity #27 | Chains: c
50S RIBOSOMAL PROTEIN L1 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 11 4616
95 % 92 95 273
90 % 93 96 283
70 % 93 96 327
50 % 152 155 228
40 % 152 155 254
30 % 205 208 221
Entity #28 | Chains: d
50S RIBOSOMAL PROTEIN L2 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 25683
95 % 5 6 13865
90 % 5 6 13625
70 % 5 6 12621
50 % 5 6 11339
40 % 5 6 10191
30 % 5 6 8605
Entity #29 | Chains: e
50S RIBOSOMAL PROTEIN L3 protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 13575
95 % 73 74 657
90 % 73 74 680
70 % 73 74 725
50 % 73 74 787
40 % 201 202 216
30 % 201 202 234
Entity #3 | Chains: C
A- AND P-SITE MESSENGER RNA CODONS rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: f
50S RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 51 851
95 % 73 74 648
90 % 73 74 672
70 % 73 74 717
50 % 73 74 778
40 % 75 76 794
30 % 77 78 772
Entity #31 | Chains: g
50S RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 521
95 % 73 74 655
90 % 73 74 679
70 % 73 74 724
50 % 73 74 786
40 % 195 196 221
30 % 195 196 239
Entity #32 | Chains: h
50S RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 7001
95 % 6 10 7142
90 % 6 10 7110
70 % 10 14 4816
50 % 227 231 112
40 % 377 381 59
30 % 575 579 38
Entity #33 | Chains: l
50S RIBOSOMAL PROTEIN L11 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 21 2555
95 % 14 21 2869
90 % 14 21 2927
70 % 17 24 2499
50 % 231 238 151
40 % 234 241 161
30 % 237 244 176
Entity #34 | Chains: m
50S RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 518
95 % 73 74 649
90 % 73 74 668
70 % 73 74 714
50 % 73 74 779
40 % 77 78 779
30 % 77 78 773
Entity #35 | Chains: n
50S RIBOSOMAL PROTEIN L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 7981
95 % 6 9 8056
90 % 6 9 7981
70 % 225 228 83
50 % 385 388 42
40 % 586 589 21
30 % 586 589 34
Entity #36 | Chains: o
50S RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 523
95 % 73 74 659
90 % 73 74 682
70 % 73 74 727
50 % 73 74 788
40 % 193 194 223
30 % 193 194 242
Entity #37 | Chains: p
50S RIBOSOMAL PROTEIN L16 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 13889
95 % 5 6 13081
90 % 6 7 10947
70 % 26 27 2376
50 % 73 74 780
40 % 78 79 753
30 % 78 79 762
Entity #38 | Chains: q
50S RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 515
95 % 73 74 644
90 % 73 74 669
70 % 73 74 715
50 % 75 76 756
40 % 75 76 791
30 % 78 79 758
Entity #39 | Chains: r
50S RIBOSOMAL PROTEIN L19 protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 70 565
95 % 69 70 700
90 % 69 70 727
70 % 69 70 773
50 % 69 70 840
40 % 69 70 867
30 % 69 70 862
Entity #4 | Chains: a
50S 23S RIBOSOMAL RNA rna, length: 2916 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #40 | Chains: s
50S RIBOSOMAL PROTEIN L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 179 64
95 % 179 180 83
90 % 179 180 86
70 % 179 180 104
50 % 348 349 73
40 % 348 349 93
30 % 350 351 107
Entity #41 | Chains: t
50S RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 528
95 % 73 74 661
90 % 73 74 684
70 % 73 74 731
50 % 76 77 747
40 % 454 455 46
30 % 454 455 62
Entity #42 | Chains: u
50S RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 519
95 % 73 74 651
90 % 73 74 674
70 % 73 74 721
50 % 202 203 199
40 % 203 204 213
30 % 203 204 232
Entity #43 | Chains: v
50S RIBOSOMAL PROTEIN L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 156 125
95 % 152 156 159
90 % 152 156 168
70 % 152 156 190
50 % 153 157 223
40 % 153 157 248
30 % 153 157 264
Entity #44 | Chains: w
50S RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 520
95 % 73 74 652
90 % 73 74 675
70 % 73 74 722
50 % 73 74 783
40 % 414 415 52
30 % 440 441 66
Entity #45 | Chains: x
50S RIBOSOMAL PROTEIN L30 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 178 63
95 % 177 178 84
90 % 177 178 88
70 % 177 178 105
50 % 177 178 144
40 % 375 376 69
30 % 375 376 84
Entity #5 | Chains: b
50S 5S RIBOSOMAL RNA rna, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: Z
Peptide chain release factor 2 protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 9340
95 % 14 15 3891
90 % 14 15 3951
70 % 14 15 3873
50 % 14 15 3775
40 % 35 36 1099
30 % 35 36 1087
Entity #7 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 291 295 33
95 % 292 296 41
90 % 292 296 46
70 % 292 296 58
50 % 444 448 36
40 % 450 454 47
30 % 450 454 63
Entity #8 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 244 248 51
95 % 244 248 65
90 % 244 248 69
70 % 244 248 87
50 % 319 323 87
40 % 319 323 105
30 % 319 323 120
Entity #9 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 292 296 32
95 % 292 296 40
90 % 292 296 45
70 % 292 296 57
50 % 454 458 29
40 % 460 464 42
30 % 460 464 59

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures