Sequence Similarity Clusters for the Entities in PDB 1ML5

Entity #1 | Chains: A
30S 16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 269 34
95 % 265 269 46
90 % 265 269 49
70 % 265 269 59
50 % 387 394 29
40 % 387 394 41
30 % 389 396 57
Entity #11 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 274 25
95 % 274 280 33
90 % 274 280 38
70 % 274 280 49
50 % 274 280 83
40 % 274 280 102
30 % 328 334 88
Entity #12 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 273 26
95 % 267 274 38
90 % 267 274 42
70 % 267 274 52
50 % 329 336 65
40 % 332 339 75
30 % 332 339 90
Entity #13 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 262 269 32
95 % 262 269 43
90 % 266 273 43
70 % 266 273 53
50 % 388 395 26
40 % 392 399 35
30 % 497 504 28
Entity #14 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 91 203
95 % 265 269 48
90 % 265 269 51
70 % 265 269 61
50 % 385 389 35
40 % 385 389 45
30 % 488 492 33
Entity #15 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 263 267 37
95 % 264 268 51
90 % 264 268 54
70 % 264 268 65
50 % 391 395 25
40 % 391 395 37
30 % 490 494 29
Entity #16 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 269 35
95 % 265 269 47
90 % 265 269 50
70 % 265 269 60
50 % 385 389 34
40 % 487 491 18
30 % 487 491 31
Entity #17 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 212 217 48
95 % 271 276 36
90 % 271 276 40
70 % 397 402 20
50 % 399 404 23
40 % 399 404 34
30 % 399 404 55
Entity #18 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 270 33
95 % 265 270 44
90 % 265 270 48
70 % 265 270 57
50 % 389 394 31
40 % 389 394 43
30 % 490 495 32
Entity #19 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 264 268 36
95 % 264 268 52
90 % 264 268 55
70 % 266 270 58
50 % 266 270 87
40 % 266 270 108
30 % 266 270 120
Entity #2 | Chains: B
T-RNA(PHE) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 272 28
95 % 271 277 35
90 % 271 277 39
70 % 271 277 50
50 % 395 402 24
40 % 398 405 33
30 % 398 405 54
Entity #21 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 14802
95 % 264 269 49
90 % 264 269 52
70 % 264 269 62
50 % 266 271 86
40 % 266 271 106
30 % 385 390 63
Entity #22 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 87 235
95 % 259 263 53
90 % 263 267 56
70 % 263 267 66
50 % 263 267 90
40 % 263 267 111
30 % 263 267 123
Entity #23 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 51 651
95 % 230 234 62
90 % 230 234 66
70 % 230 234 77
50 % 230 234 103
40 % 230 234 129
30 % 230 234 140
Entity #24 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 272 27
95 % 266 272 40
90 % 266 272 45
70 % 266 272 54
50 % 388 394 28
40 % 388 394 39
30 % 388 394 58
Entity #25 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 51 461
95 % 264 268 50
90 % 264 268 53
70 % 264 268 64
50 % 264 268 89
40 % 264 268 110
30 % 264 268 122
Entity #26 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 259 41
95 % 255 259 56
90 % 255 259 59
70 % 255 259 69
50 % 255 259 94
40 % 255 259 116
30 % 255 259 129
Entity #27 | Chains: c
50S RIBOSOMAL PROTEIN L1 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 29 892
95 % 87 90 246
90 % 88 91 254
70 % 88 91 284
50 % 133 136 224
40 % 133 136 251
30 % 184 187 202
Entity #28 | Chains: d
50S RIBOSOMAL PROTEIN L2 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 26230
95 % 5 6 11739
90 % 5 6 11560
70 % 5 6 10885
50 % 5 6 9768
40 % 5 6 8849
30 % 5 6 7722
Entity #29 | Chains: e
50S RIBOSOMAL PROTEIN L3 protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 11071
95 % 73 74 551
90 % 73 74 581
70 % 73 74 613
50 % 73 74 662
40 % 175 176 205
30 % 175 176 219
Entity #3 | Chains: C
A- AND P-SITE MESSENGER RNA CODONS rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: f
50S RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 9623
95 % 73 74 554
90 % 73 74 584
70 % 73 74 616
50 % 73 74 665
40 % 75 76 688
30 % 76 77 682
Entity #31 | Chains: g
50S RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 398
95 % 73 74 560
90 % 73 74 588
70 % 73 74 618
50 % 73 74 667
40 % 175 176 207
30 % 175 176 221
Entity #32 | Chains: h
50S RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 5994
95 % 6 10 6563
90 % 6 10 6550
70 % 9 13 4674
50 % 189 193 114
40 % 316 320 65
30 % 487 491 34
Entity #33 | Chains: l
50S RIBOSOMAL PROTEIN L11 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 19 2337
95 % 14 21 2635
90 % 14 21 2680
70 % 17 24 2225
50 % 208 215 135
40 % 211 218 149
30 % 214 221 162
Entity #34 | Chains: m
50S RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 400
95 % 73 74 562
90 % 73 74 590
70 % 73 74 623
50 % 73 74 672
40 % 76 77 680
30 % 77 78 674
Entity #35 | Chains: n
50S RIBOSOMAL PROTEIN L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 6829
95 % 6 9 7354
90 % 6 9 7322
70 % 15 18 3379
50 % 324 327 53
40 % 325 328 61
30 % 497 500 30
Entity #36 | Chains: o
50S RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 399
95 % 73 74 561
90 % 73 74 589
70 % 73 74 620
50 % 73 74 669
40 % 73 74 710
30 % 485 486 35
Entity #37 | Chains: p
50S RIBOSOMAL PROTEIN L16 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 12601
95 % 5 6 12021
90 % 6 7 9721
70 % 26 27 2061
50 % 73 74 668
40 % 78 79 655
30 % 78 79 667
Entity #38 | Chains: q
50S RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 397
95 % 73 74 559
90 % 73 74 587
70 % 73 74 617
50 % 75 76 648
40 % 75 76 690
30 % 78 79 664
Entity #39 | Chains: r
50S RIBOSOMAL PROTEIN L19 protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 70 433
95 % 69 70 613
90 % 69 70 639
70 % 69 70 677
50 % 69 70 727
40 % 69 70 766
30 % 69 70 765
Entity #4 | Chains: a
50S 23S RIBOSOMAL RNA rna, length: 2916 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #40 | Chains: s
50S RIBOSOMAL PROTEIN L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 159 160 58
95 % 160 161 76
90 % 160 161 81
70 % 160 161 96
50 % 296 297 72
40 % 296 297 87
30 % 298 299 103
Entity #41 | Chains: t
50S RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 406
95 % 73 74 566
90 % 73 74 593
70 % 73 74 626
50 % 75 76 651
40 % 77 78 667
30 % 396 397 56
Entity #42 | Chains: u
50S RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 404
95 % 73 74 564
90 % 73 74 592
70 % 73 74 625
50 % 175 176 191
40 % 175 176 208
30 % 175 176 222
Entity #43 | Chains: v
50S RIBOSOMAL PROTEIN L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 129 133 108
95 % 129 133 153
90 % 129 133 163
70 % 129 133 184
50 % 130 134 218
40 % 130 134 243
30 % 130 134 253
Entity #44 | Chains: w
50S RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 408
95 % 73 74 567
90 % 73 74 594
70 % 73 74 627
50 % 73 74 673
40 % 73 74 713
30 % 73 74 713
Entity #45 | Chains: x
50S RIBOSOMAL PROTEIN L30 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 159 57
95 % 158 159 77
90 % 158 159 82
70 % 158 159 97
50 % 158 159 134
40 % 318 319 66
30 % 318 319 80
Entity #5 | Chains: b
50S 5S RIBOSOMAL RNA rna, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: Z
Peptide chain release factor 2 protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 7524
95 % 10 11 4620
90 % 10 11 4635
70 % 10 11 4554
50 % 10 11 4391
40 % 27 28 1297
30 % 27 28 1273
Entity #7 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 269 31
95 % 266 270 41
90 % 266 270 46
70 % 266 270 55
50 % 384 388 33
40 % 387 391 42
30 % 387 391 61
Entity #8 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 229 233 45
95 % 229 233 63
90 % 229 233 67
70 % 229 233 78
50 % 298 302 78
40 % 298 302 96
30 % 298 302 112
Entity #9 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 8457
95 % 266 270 42
90 % 266 270 47
70 % 266 270 56
50 % 386 390 30
40 % 389 393 40
30 % 389 393 59

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.