Sequence Similarity Clusters for the Entities in PDB 1ML5

Entity #1 | Chains: A
30S 16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 272 34
95 % 268 272 48
90 % 268 272 53
70 % 268 272 64
50 % 420 427 32
40 % 420 427 44
30 % 422 429 63
Entity #11 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 271 277 27
95 % 277 283 37
90 % 277 283 42
70 % 277 283 52
50 % 277 283 91
40 % 277 283 115
30 % 360 366 94
Entity #12 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 276 28
95 % 270 277 40
90 % 270 277 45
70 % 270 277 56
50 % 360 367 67
40 % 365 372 84
30 % 365 372 97
Entity #13 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 272 32
95 % 265 272 46
90 % 269 276 46
70 % 269 276 57
50 % 425 432 29
40 % 431 438 40
30 % 555 562 32
Entity #14 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 91 232
95 % 268 272 50
90 % 268 272 55
70 % 268 272 67
50 % 417 421 35
40 % 417 421 47
30 % 542 546 36
Entity #15 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 270 38
95 % 267 271 53
90 % 267 271 58
70 % 267 271 70
50 % 428 432 28
40 % 428 432 41
30 % 541 545 34
Entity #16 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 272 35
95 % 268 272 49
90 % 268 272 54
70 % 268 272 66
50 % 422 426 34
40 % 553 557 19
30 % 553 557 33
Entity #17 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 213 218 54
95 % 274 279 39
90 % 274 279 44
70 % 425 430 20
50 % 438 443 26
40 % 438 443 39
30 % 438 443 58
Entity #18 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 273 33
95 % 268 273 47
90 % 268 273 51
70 % 268 273 62
50 % 425 430 33
40 % 425 430 45
30 % 541 546 37
Entity #19 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 271 36
95 % 267 271 55
90 % 267 271 60
70 % 280 284 54
50 % 280 284 93
40 % 280 284 116
30 % 280 284 126
Entity #2 | Chains: B
T-RNA(PHE) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 275 30
95 % 274 280 38
90 % 274 280 43
70 % 274 280 55
50 % 432 439 27
40 % 437 444 37
30 % 437 444 57
Entity #21 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 16235
95 % 267 272 51
90 % 267 272 56
70 % 267 272 68
50 % 277 282 94
40 % 277 282 117
30 % 418 423 65
Entity #22 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 87 283
95 % 262 266 56
90 % 266 270 61
70 % 266 270 71
50 % 266 270 98
40 % 266 270 121
30 % 266 270 129
Entity #23 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 51 740
95 % 233 237 68
90 % 233 237 71
70 % 233 237 86
50 % 233 237 117
40 % 233 237 141
30 % 233 237 146
Entity #24 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 275 29
95 % 269 275 43
90 % 269 275 48
70 % 269 275 59
50 % 426 432 30
40 % 429 435 42
30 % 429 435 59
Entity #25 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 51 543
95 % 267 271 52
90 % 267 271 57
70 % 267 271 69
50 % 267 271 97
40 % 267 271 119
30 % 267 271 128
Entity #26 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 258 262 43
95 % 258 262 59
90 % 258 262 63
70 % 258 262 76
50 % 258 262 103
40 % 258 262 126
30 % 258 262 134
Entity #27 | Chains: c
50S RIBOSOMAL PROTEIN L1 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 29 991
95 % 87 90 279
90 % 88 91 290
70 % 88 91 336
50 % 143 146 238
40 % 143 146 260
30 % 195 198 210
Entity #28 | Chains: d
50S RIBOSOMAL PROTEIN L2 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 28642
95 % 5 6 12817
90 % 5 6 12607
70 % 5 6 11874
50 % 5 6 10590
40 % 5 6 9599
30 % 5 6 8373
Entity #29 | Chains: e
50S RIBOSOMAL PROTEIN L3 protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 12123
95 % 73 74 628
90 % 73 74 656
70 % 73 74 701
50 % 73 74 752
40 % 192 193 211
30 % 192 193 221
Entity #3 | Chains: C
A- AND P-SITE MESSENGER RNA CODONS rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: f
50S RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 10518
95 % 73 74 631
90 % 73 74 659
70 % 73 74 703
50 % 73 74 754
40 % 75 76 766
30 % 77 78 746
Entity #31 | Chains: g
50S RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 460
95 % 73 74 637
90 % 73 74 663
70 % 73 74 707
50 % 73 74 759
40 % 188 189 215
30 % 188 189 226
Entity #32 | Chains: h
50S RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 6631
95 % 6 10 7241
90 % 6 10 7205
70 % 10 14 4802
50 % 210 214 121
40 % 352 356 72
30 % 542 546 38
Entity #33 | Chains: l
50S RIBOSOMAL PROTEIN L11 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 19 2609
95 % 14 21 2891
90 % 14 21 2929
70 % 17 24 2441
50 % 222 229 148
40 % 225 232 159
30 % 228 235 167
Entity #34 | Chains: m
50S RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 463
95 % 73 74 639
90 % 73 74 665
70 % 73 74 711
50 % 73 74 764
40 % 76 77 760
30 % 77 78 750
Entity #35 | Chains: n
50S RIBOSOMAL PROTEIN L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 7511
95 % 6 9 8072
90 % 6 9 8013
70 % 209 212 92
50 % 360 363 51
40 % 553 556 20
30 % 553 556 35
Entity #36 | Chains: o
50S RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 461
95 % 73 74 638
90 % 73 74 664
70 % 73 74 709
50 % 73 74 761
40 % 73 74 796
30 % 532 533 39
Entity #37 | Chains: p
50S RIBOSOMAL PROTEIN L16 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 13790
95 % 5 6 13114
90 % 6 7 10599
70 % 26 27 2270
50 % 73 74 760
40 % 78 79 736
30 % 78 79 734
Entity #38 | Chains: q
50S RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 459
95 % 73 74 636
90 % 73 74 662
70 % 73 74 706
50 % 75 76 737
40 % 75 76 771
30 % 78 79 731
Entity #39 | Chains: r
50S RIBOSOMAL PROTEIN L19 protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 70 498
95 % 69 70 691
90 % 69 70 719
70 % 69 70 763
50 % 69 70 811
40 % 69 70 850
30 % 69 70 835
Entity #4 | Chains: a
50S 23S RIBOSOMAL RNA rna, length: 2916 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #40 | Chains: s
50S RIBOSOMAL PROTEIN L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 163 63
95 % 163 164 88
90 % 163 164 92
70 % 163 164 111
50 % 324 325 75
40 % 324 325 95
30 % 326 327 106
Entity #41 | Chains: t
50S RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 466
95 % 73 74 643
90 % 73 74 668
70 % 73 74 714
50 % 75 76 742
40 % 77 78 749
30 % 429 430 62
Entity #42 | Chains: u
50S RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 465
95 % 73 74 641
90 % 73 74 667
70 % 73 74 713
50 % 192 193 196
40 % 193 194 210
30 % 193 194 220
Entity #43 | Chains: v
50S RIBOSOMAL PROTEIN L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 144 148 116
95 % 144 148 159
90 % 144 148 168
70 % 144 148 192
50 % 145 149 228
40 % 145 149 246
30 % 145 149 255
Entity #44 | Chains: w
50S RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 467
95 % 73 74 644
90 % 73 74 669
70 % 73 74 715
50 % 73 74 765
40 % 390 391 54
30 % 416 417 67
Entity #45 | Chains: x
50S RIBOSOMAL PROTEIN L30 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 162 62
95 % 161 162 90
90 % 161 162 94
70 % 161 162 113
50 % 161 162 151
40 % 351 352 75
30 % 351 352 87
Entity #5 | Chains: b
50S 5S RIBOSOMAL RNA rna, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: Z
Peptide chain release factor 2 protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 6175
95 % 12 13 4400
90 % 12 13 4427
70 % 12 13 4342
50 % 12 13 4181
40 % 29 30 1338
30 % 29 30 1318
Entity #7 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 272 31
95 % 269 273 44
90 % 269 273 49
70 % 269 273 60
50 % 415 419 36
40 % 420 424 46
30 % 420 424 64
Entity #8 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 232 236 49
95 % 232 236 69
90 % 232 236 72
70 % 232 236 87
50 % 306 310 86
40 % 306 310 106
30 % 306 310 120
Entity #9 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 9250
95 % 269 273 45
90 % 269 273 50
70 % 269 273 61
50 % 423 427 31
40 % 428 432 43
30 % 428 432 60

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures