Sequence Similarity Clusters for the Entities in PDB 1ML5

Entity #1 | Chains: A
30S 16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 269 34
95 % 265 269 45
90 % 265 269 48
70 % 265 269 57
50 % 376 383 29
40 % 376 383 40
30 % 378 385 58
Entity #11 | Chains: I
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 274 24
95 % 274 280 32
90 % 274 280 37
70 % 274 280 48
50 % 274 280 83
40 % 274 280 102
30 % 326 332 78
Entity #12 | Chains: J
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 273 26
95 % 267 274 36
90 % 267 274 40
70 % 267 274 50
50 % 325 332 59
40 % 326 333 72
30 % 326 333 88
Entity #13 | Chains: K
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 262 269 32
95 % 262 269 42
90 % 266 273 41
70 % 266 273 51
50 % 378 385 28
40 % 380 387 38
30 % 476 483 28
Entity #14 | Chains: L
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 91 200
95 % 265 269 47
90 % 265 269 50
70 % 265 269 59
50 % 375 379 36
40 % 375 379 45
30 % 469 473 36
Entity #15 | Chains: M
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 263 267 37
95 % 264 268 50
90 % 264 268 53
70 % 264 268 64
50 % 381 385 26
40 % 381 385 37
30 % 472 476 29
Entity #16 | Chains: N
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 269 35
95 % 265 269 46
90 % 265 269 49
70 % 265 269 58
50 % 375 379 35
40 % 466 470 19
30 % 467 471 32
Entity #17 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 212 217 47
95 % 271 276 35
90 % 271 276 39
70 % 385 390 21
50 % 386 391 25
40 % 386 391 36
30 % 386 391 55
Entity #18 | Chains: P
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 270 33
95 % 265 270 43
90 % 265 270 47
70 % 265 270 56
50 % 379 384 31
40 % 379 384 43
30 % 472 477 35
Entity #19 | Chains: Q
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 264 268 36
95 % 264 268 51
90 % 264 268 54
70 % 265 269 61
50 % 265 269 87
40 % 265 269 107
30 % 265 269 117
Entity #2 | Chains: B
T-RNA(PHE) rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 272 28
95 % 271 277 34
90 % 271 277 38
70 % 271 277 49
50 % 385 392 23
40 % 386 393 35
30 % 386 393 53
Entity #21 | Chains: S
30S RIBOSOMAL PROTEIN S16 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 14598
95 % 264 269 48
90 % 264 269 51
70 % 264 269 60
50 % 264 269 86
40 % 265 270 106
30 % 377 382 62
Entity #22 | Chains: T
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 87 232
95 % 259 263 52
90 % 263 267 55
70 % 263 267 65
50 % 263 267 90
40 % 263 267 109
30 % 263 267 119
Entity #23 | Chains: U
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 51 635
95 % 230 234 62
90 % 230 234 66
70 % 230 234 77
50 % 230 234 103
40 % 230 234 129
30 % 230 234 139
Entity #24 | Chains: V
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 272 27
95 % 266 272 39
90 % 266 272 44
70 % 266 272 53
50 % 376 382 30
40 % 376 382 41
30 % 376 382 59
Entity #25 | Chains: W
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 51 436
95 % 264 268 49
90 % 264 268 52
70 % 264 268 63
50 % 264 268 89
40 % 264 268 108
30 % 264 268 118
Entity #26 | Chains: X
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 259 41
95 % 255 259 54
90 % 255 259 58
70 % 255 259 68
50 % 255 259 93
40 % 255 259 115
30 % 255 259 128
Entity #27 | Chains: c
50S RIBOSOMAL PROTEIN L1 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 29 880
95 % 87 90 241
90 % 88 91 248
70 % 88 91 279
50 % 133 136 221
40 % 133 136 246
30 % 183 186 200
Entity #28 | Chains: d
50S RIBOSOMAL PROTEIN L2 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 25895
95 % 5 6 11610
90 % 5 6 11431
70 % 5 6 10761
50 % 5 6 9656
40 % 5 6 8763
30 % 5 6 7654
Entity #29 | Chains: e
50S RIBOSOMAL PROTEIN L3 protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 10936
95 % 73 74 502
90 % 73 74 533
70 % 73 74 569
50 % 73 74 647
40 % 166 167 222
30 % 166 167 230
Entity #3 | Chains: C
A- AND P-SITE MESSENGER RNA CODONS rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: f
50S RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 9502
95 % 73 74 504
90 % 73 74 535
70 % 73 74 575
50 % 73 74 650
40 % 75 76 677
30 % 76 77 676
Entity #31 | Chains: g
50S RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 343
95 % 73 74 507
90 % 73 74 540
70 % 73 74 578
50 % 73 74 652
40 % 166 167 223
30 % 166 167 231
Entity #32 | Chains: h
50S RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 5920
95 % 6 10 6491
90 % 6 10 6478
70 % 9 13 4620
50 % 187 191 114
40 % 307 311 66
30 % 469 473 37
Entity #33 | Chains: l
50S RIBOSOMAL PROTEIN L11 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 19 2310
95 % 14 21 2596
90 % 14 21 2637
70 % 17 24 2191
50 % 202 209 137
40 % 205 212 152
30 % 208 215 168
Entity #34 | Chains: m
50S RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 345
95 % 73 74 509
90 % 73 74 545
70 % 73 74 584
50 % 73 74 657
40 % 76 77 667
30 % 77 78 668
Entity #35 | Chains: n
50S RIBOSOMAL PROTEIN L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 6730
95 % 6 9 7269
90 % 6 9 7237
70 % 13 16 3822
50 % 312 315 53
40 % 313 316 63
30 % 476 479 31
Entity #36 | Chains: o
50S RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 344
95 % 73 74 508
90 % 73 74 542
70 % 73 74 580
50 % 73 74 654
40 % 73 74 700
30 % 467 468 38
Entity #37 | Chains: p
50S RIBOSOMAL PROTEIN L16 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 12446
95 % 5 6 11887
90 % 6 7 9609
70 % 26 27 2027
50 % 73 74 653
40 % 78 79 645
30 % 78 79 661
Entity #38 | Chains: q
50S RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 342
95 % 73 74 506
90 % 73 74 538
70 % 73 74 576
50 % 75 76 634
40 % 75 76 678
30 % 78 79 658
Entity #39 | Chains: r
50S RIBOSOMAL PROTEIN L19 protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 70 397
95 % 69 70 579
90 % 69 70 618
70 % 69 70 655
50 % 69 70 710
40 % 69 70 750
30 % 69 70 754
Entity #4 | Chains: a
50S 23S RIBOSOMAL RNA rna, length: 2916 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #40 | Chains: s
50S RIBOSOMAL PROTEIN L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 159 160 58
95 % 160 161 73
90 % 160 161 78
70 % 160 161 92
50 % 287 288 72
40 % 287 288 86
30 % 289 290 102
Entity #41 | Chains: t
50S RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 351
95 % 73 74 514
90 % 73 74 551
70 % 73 74 589
50 % 75 76 636
40 % 77 78 657
30 % 387 388 57
Entity #42 | Chains: u
50S RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 349
95 % 73 74 512
90 % 73 74 548
70 % 73 74 588
50 % 166 167 203
40 % 166 167 224
30 % 166 167 232
Entity #43 | Chains: v
50S RIBOSOMAL PROTEIN L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 122 126 109
95 % 122 126 156
90 % 122 126 165
70 % 122 126 191
50 % 123 127 223
40 % 123 127 249
30 % 123 127 260
Entity #44 | Chains: w
50S RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 74 352
95 % 73 74 515
90 % 73 74 552
70 % 73 74 590
50 % 73 74 659
40 % 73 74 703
30 % 73 74 704
Entity #45 | Chains: x
50S RIBOSOMAL PROTEIN L30 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 159 57
95 % 158 159 75
90 % 158 159 80
70 % 158 159 94
50 % 158 159 132
40 % 309 310 67
30 % 309 310 80
Entity #5 | Chains: b
50S 5S RIBOSOMAL RNA rna, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: Z
Peptide chain release factor 2 protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 23662
95 % 4 5 9330
90 % 4 5 9221
70 % 4 5 8771
50 % 4 5 7987
40 % 20 21 1575
30 % 20 21 1534
Entity #7 | Chains: E
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 269 31
95 % 266 270 40
90 % 266 270 45
70 % 266 270 54
50 % 374 378 34
40 % 375 379 44
30 % 375 379 61
Entity #8 | Chains: F
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 229 233 44
95 % 229 233 63
90 % 229 233 67
70 % 229 233 78
50 % 289 293 78
40 % 289 293 96
30 % 289 293 113
Entity #9 | Chains: G
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 8342
95 % 266 270 41
90 % 266 270 46
70 % 266 270 55
50 % 375 379 32
40 % 376 380 42
30 % 376 380 60

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.