Sequence Similarity Clusters for the Entities in PDB 1MKX

Entity #1 | Chains: L
ALPHA-THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 17 1423
95 % 4 17 1924 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.8
PDBFlex
90 % 4 17 1974
70 % 4 17 1989
50 % 15 42 822
40 % 15 42 857
30 % 15 42 838
Entity #2 | Chains: H
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 22 1121
95 % 4 22 1526
90 % 4 22 1553
70 % 263 403 45
50 % 263 403 78
40 % 1229 1674 4
30 % 1323 1822 6
Entity #3 | Chains: K
PRETHROMBIN-2 protein, length: 308 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 35039
95 % 1 2 27539 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 26609
70 % 264 403 45
50 % 264 403 78
40 % 1230 1674 4
30 % 1324 1822 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.