Sequence Similarity Clusters for the Entities in PDB 1MKX

Entity #1 | Chains: L
ALPHA-THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 17 1773
95 % 4 17 2082 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.9
PDBFlex
90 % 4 17 2135
70 % 4 17 2144
50 % 15 42 886
40 % 15 42 911
30 % 15 42 899
Entity #2 | Chains: H
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 22 1429
95 % 4 22 1686 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 4 22 1725
70 % 268 409 47
50 % 268 409 85
40 % 1355 1873 4
30 % 1363 1887 7
Entity #3 | Chains: K
PRETHROMBIN-2 protein, length: 308 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 46027
95 % 1 2 38290
90 % 1 2 36523
70 % 269 409 47
50 % 269 409 85
40 % 1356 1873 4
30 % 1364 1887 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures