Sequence Similarity Clusters for the Entities in PDB 1MKX

Entity #1 | Chains: L
ALPHA-THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 17 1474
95 % 4 17 1989 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.9
PDBFlex
90 % 4 17 2036
70 % 4 17 2042
50 % 15 42 847
40 % 15 42 878
30 % 15 42 864
Entity #2 | Chains: H
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 22 1177
95 % 4 22 1597 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 4 22 1625
70 % 266 405 45
50 % 266 405 80
40 % 1238 1685 4
30 % 1332 1834 6
Entity #3 | Chains: K
PRETHROMBIN-2 protein, length: 308 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 36058
95 % 1 2 28345 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 27366
70 % 267 405 45
50 % 267 405 80
40 % 1239 1685 4
30 % 1333 1834 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.