Sequence Similarity Clusters for the Entities in PDB 1MKX

Entity #1 | Chains: L
ALPHA-THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 17 1503
95 % 4 17 2017 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.9
PDBFlex
90 % 4 17 2063
70 % 4 17 2072
50 % 15 42 857
40 % 15 42 887
30 % 15 42 872
Entity #2 | Chains: H
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 22 1207
95 % 4 22 1615 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 4 22 1645
70 % 266 405 46
50 % 266 405 84
40 % 1244 1698 4
30 % 1338 1848 6
Entity #3 | Chains: K
PRETHROMBIN-2 protein, length: 308 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 36503
95 % 1 2 28687
90 % 1 2 27686
70 % 267 405 46
50 % 267 405 84
40 % 1245 1698 4
30 % 1339 1848 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures