Sequence Similarity Clusters for the Entities in PDB 1MKW

Entity #1 | Chains: L
ALPHA-THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 17 1353
95 % 6 17 1841
90 % 6 17 1885
70 % 6 17 1915
50 % 20 41 788
40 % 20 41 816
30 % 20 41 816
Entity #2 | Chains: H
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 22 1066
95 % 7 22 1483
90 % 7 22 1507
70 % 288 398 41
50 % 288 398 74
40 % 1266 1611 4
30 % 1367 1753 6
Entity #3 | Chains: K
PRETHROMBIN-2 protein, length: 308 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 33863
95 % 2 2 26627
90 % 2 2 25741
70 % 289 398 41
50 % 289 398 74
40 % 1267 1611 4
30 % 1368 1753 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.