Sequence Similarity Clusters for the Entities in PDB 1MKW

Entity #1 | Chains: L
ALPHA-THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 17 1501
95 % 6 17 2015 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.9
PDBFlex
90 % 6 17 2061
70 % 6 17 2070
50 % 20 42 853
40 % 20 42 884
30 % 20 42 870
Entity #2 | Chains: H
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 22 1205
95 % 7 22 1615 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 7 22 1645
70 % 294 405 46
50 % 294 405 84
40 % 1338 1698 4
30 % 1439 1848 6
Entity #3 | Chains: K
PRETHROMBIN-2 protein, length: 308 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 36452
95 % 2 2 28643
90 % 2 2 27649
70 % 295 405 46
50 % 295 405 84
40 % 1339 1698 4
30 % 1440 1848 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.