Sequence Similarity Clusters for the Entities in PDB 1MKW

Entity #1 | Chains: L
ALPHA-THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 17 1474
95 % 6 17 1989 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.9
PDBFlex
90 % 6 17 2036
70 % 6 17 2042
50 % 20 42 847
40 % 20 42 878
30 % 20 42 864
Entity #2 | Chains: H
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 22 1177
95 % 7 22 1597 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 7 22 1625
70 % 295 405 45
50 % 295 405 80
40 % 1332 1685 4
30 % 1433 1834 6
Entity #3 | Chains: K
PRETHROMBIN-2 protein, length: 308 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 36058
95 % 2 2 28345 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 27366
70 % 296 405 45
50 % 296 405 80
40 % 1333 1685 4
30 % 1434 1834 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.