Sequence Similarity Clusters for the Entities in PDB 1MKW

Entity #1 | Chains: L
ALPHA-THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 17 1333
95 % 6 17 1827
90 % 6 17 1868
70 % 6 17 1889
50 % 20 41 783
40 % 20 41 812
30 % 20 41 813
Entity #2 | Chains: H
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 22 1051
95 % 7 22 1470
90 % 7 22 1495
70 % 288 398 40
50 % 288 398 74
40 % 1261 1606 4
30 % 1362 1748 6
Entity #3 | Chains: K
PRETHROMBIN-2 protein, length: 308 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 33573
95 % 2 2 26390
90 % 2 2 25512
70 % 289 398 40
50 % 289 398 74
40 % 1262 1606 4
30 % 1363 1748 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.