Sequence Similarity Clusters for the Entities in PDB 1MKW

Entity #1 | Chains: L
ALPHA-THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 17 1456
95 % 6 17 1965 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.9
PDBFlex
90 % 6 17 2014
70 % 6 17 2023
50 % 20 42 840
40 % 20 42 870
30 % 20 42 857
Entity #2 | Chains: H
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 22 1157
95 % 7 22 1571 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 7 22 1597
70 % 295 405 43
50 % 295 405 78
40 % 1329 1682 4
30 % 1430 1831 6
Entity #3 | Chains: K
PRETHROMBIN-2 protein, length: 308 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 35453
95 % 2 2 27846 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 26900
70 % 296 405 43
50 % 296 405 78
40 % 1330 1682 4
30 % 1431 1831 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.