Sequence Similarity Clusters for the Entities in PDB 1MKW

Entity #1 | Chains: L
ALPHA-THROMBIN protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 17 1548
95 % 6 17 2088 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.9
PDBFlex
90 % 6 17 2140
70 % 6 17 2148
50 % 20 42 876
40 % 20 42 908
30 % 20 42 895
Entity #2 | Chains: H
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 22 1242
95 % 7 22 1670 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 7 22 1703
70 % 297 408 46
50 % 297 408 84
40 % 1457 1863 4
30 % 1466 1885 6
Entity #3 | Chains: K
PRETHROMBIN-2 protein, length: 308 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 37581
95 % 2 2 29471
90 % 2 2 28431
70 % 298 408 46
50 % 298 408 84
40 % 1458 1863 4
30 % 1467 1885 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures