Sequence Similarity Clusters for the Entities in PDB 1MKO

Entity #1 | Chains: A,C
Hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 172 257 12
95 % 181 268 17 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.8
PDBFlex
90 % 181 268 19
70 % 206 335 18
50 % 489 761 4
40 % 494 766 7
30 % 967 1319 6
Entity #2 | Chains: B,D
Hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 151 218 42
95 % 179 254 23 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 182 259 20
70 % 223 350 14
50 % 490 761 4
40 % 495 766 7
30 % 968 1319 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2W72 2 B, D HUMAN HEMOGLOBIN A CHAIN BETA, RESIDUES 2-147 9606
2 1IRD 2 B Hemoglobin beta chain 9606
3 2DN2 2 B, D Hemoglobin beta subunit 9606
4 2DN3 2 B Hemoglobin beta subunit 9606
5 2DN1 2 B Hemoglobin beta subunit 9606
6 1J41 2 B, D, F, H Hemoglobin beta Chain 9606
7 1J40 2 B, D, F, H Hemoglobin beta Chain 9606
8 1BAB 2 B, D HEMOGLOBIN THIONVILLE (DEOXY) (BETA CHAIN) 9606
9 3S66 2 B Hemoglobin subunit beta 9606
10 2D5Z 2 B, D Hemoglobin beta subunit 9606
11 1BZ0 2 B, D PROTEIN (HEMOGLOBIN BETA CHAIN) 9606
12 1UIW 2 B, D, F, H Hemoglobin beta chain 9606
13 1J3Y 2 B, D, F, H Hemoglobin beta Chain 9606
14 3QJD 2 B, D Hemoglobin subunit beta 9606
15 1THB 2 B, D HEMOGLOBIN A (DEOXY) (BETA CHAIN) 9606
16 1BZZ 2 B, D PROTEIN (HEMOGLOBIN BETA CHAIN) 9606
17 5WOG 2 C, D Hemoglobin subunit beta 9606
18 1J3Z 2 B, D, F, H Hemoglobin beta Chain 9606
19 1BZ1 2 B, D PROTEIN (HEMOGLOBIN BETA CHAIN) 9606
20 3NMM 2 B, D Hemoglobin subunit beta 9606
21 5WOH 2 B, D Hemoglobin subunit beta 9606
22 4HHB 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
23 1J7Y 2 B, D Hemoglobin beta chain 9606
24 1DXV 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
25 1DXT 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
26 1DXU 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
27 6BWP 2 B, D Hemoglobin subunit beta 9606
28 3DUT 2 B, D Hemoglobin subunit beta 9606
29 1SDK 2 B, D HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY 9606
30 2HHB 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
31 1QSH 2 B, D PROTEIN (HEMOGLOBIN BETA CHAIN) 9606
32 4ROL 2 B, D Hemoglobin subunit beta 9606
33 1SDL 2 B, D HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY 9606
34 1BBB 2 B, D HEMOGLOBIN A (CARBONMONOXY) (BETA CHAIN) 9606
35 1QSI 2 B, D PROTEIN (HEMOGLOBIN BETA CHAIN) 9606
36 1CBM 1 A, B, C, D HEMOGLOBIN BETA 4 (CARBONMONOXY) 9606
37 4MQG 2 B Hemoglobin subunit beta 9606
38 2D60 2 B, D Hemoglobin beta subunit 9606
39 2W6V 2 B, D HEMOGLOBIN SUBUNIT BETA CHAIN BETA, RESIDUES 2-147 9606
40 1GBU 2 B, D HEMOGLOBIN DEOXY 9606
41 1NQP 2 B, D Hemoglobin beta chain 9606
42 1QI8 2 B, D HEMOGLOBIN BETA CHAIN 9606
43 1A01 2 B, D HEMOGLOBIN (BETA CHAIN) 9606
44 1A3N 2 B, D HEMOGLOBIN (BETA CHAIN) 9606
45 3QJB 2 B Hemoglobin subunit beta 9606
46 1C7C 2 B, D PROTEIN (DEOXYHEMOGLOBIN (BETA CHAIN)) 9606
47 5E83 2 B, D Hemoglobin subunit beta 9606
48 1YE2 2 B, D Hemoglobin beta chain 9606
49 1A3O 2 B, D HEMOGLOBIN (BETA CHAIN) 9606
50 1O1O 2 B, D Hemoglobin beta chain 9606
51 5KSI 2 B, D Hemoglobin subunit beta 9606
52 5E6E 2 B Hemoglobin subunit beta 9606
53 3HHB 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
54 1R1Y 2 B, D Hemoglobin beta chain 9606
55 1K0Y 2 B, D hemoglobin beta chain 9606
56 1YVQ 2 B, D Hemoglobin beta chain 9606
57 5UCU 2 B Hemoglobin subunit beta 9606
58 1C7D 2 B, D PROTEIN (DEOXYHEMOGLOBIN (BETA CHAIN)) 9606
59 1O1P 2 B, D Hemoglobin beta chain 9606
60 1O1J 2 B, D Hemoglobin Beta chain 9606
61 1C7B 2 B, D PROTEIN (DEOXYHEMOGLOBIN (BETA CHAIN)) 9606
62 1O1N 2 B, D Hemoglobin beta chain 9606
63 3NL7 2 B Hemoglobin subunit beta 9606
64 1CBL 1 A, B, C, D HEMOGLOBIN BETA 4 (DEOXY) 9606
65 1Y4V 2 B, D Hemoglobin beta chain 9606
66 5URC 2 B, D Hemoglobin subunit beta 9606
67 1G9V 2 B, D HEMOGLOBIN BETA CHAIN 9606
68 1YVT 2 B Hemoglobin beta chain 9606
69 1CLS 2 B, D HEMOGLOBIN CROSS-LINKED DEOXY FORM 9606
70 1VWT 2 B, D HEMOGLOBIN ALPHA AQUOMET, BETA DEOXY 9606
71 1QXE 2 B, D Hemoglobin beta chain beta chain 9606
72 1RQ3 2 B, D Hemoglobin beta chain 9606
73 1XZ2 2 B, D Hemoglobin beta chain 9606
74 3QJE 2 B, D Hemoglobin subunit beta 9606
75 4L7Y 2 B, D Hemoglobin subunit beta 9606
76 5SW7 2 B Hemoglobin subunit beta 9606
77 1O1L 2 B, D Hemoglobin Beta chain 9606
78 1XZ7 2 B, D Hemoglobin beta chain 9606
79 3D7O 2 B Hemoglobin subunit beta 9606
80 3IC0 2 B, D Hemoglobin subunit beta 9606
81 1O1M 2 B, D Hemoglobin Beta chain 9606
82 1BUW 2 B, D PROTEIN (HEMOGLOBIN) THE SULFHYDRYL GROUPS OF CYSTEINE 93 OF BETA SUBUNITS ARE S-NITROSYLATED. THE HEME GROUPS ARE NITROSYLATED. 9606
83 1XXT 2 B, D Hemoglobin beta chain 9606
84 1HBB 2 B, D HEMOGLOBIN A (DEOXY) (BETA CHAIN) 9606
85 1KD2 2 B, D Hemoglobin beta chain 9606
86 1ABW 2 B, D HEMOGLOBIN-BASED BLOOD SUBSTITUTE 9606
87 5E29 2 B, D Hemoglobin subunit beta 9606
88 3WHM 2 B, F Hemoglobin subunit beta 9606
89 1A0Z 2 B, D HEMOGLOBIN (BETA CHAIN) 9606
90 6DI4 2 B, D Hemoglobin subunit beta 9606
91 1Y83 2 B, D Hemoglobin beta chain 9606
92 1A00 2 B, D HEMOGLOBIN (BETA CHAIN) 9606
93 1Y7Z 2 B, D Hemoglobin beta chain 9606
94 4N8T 2 B Hemoglobin subunit beta 9606
95 2HBS 2 B, D, F, H HEMOGLOBIN S (DEOXY), BETA CHAIN 9606
96 1Y7D 2 B, D Hemoglobin beta chain 9606
97 1Y4G 2 B, D Hemoglobin beta chain 9606
98 4MQI 2 B Hemoglobin subunit beta 9606
99 1Y45 2 B, D Hemoglobin beta chain 9606
100 4NI1 2 B Hemoglobin subunit beta 9606
101 1J7W 2 B, D hemoglobin beta chain 9606
102 2HHD 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
103 1YIH 2 B, D Hemoglobin beta chain 9606
104 1K1K 2 B HEMOGLOBIN BETA CHAIN 9606
105 3OO4 2 B Hemoglobin subunit beta 9606
106 1GBV 2 B, D HEMOGLOBIN ALPHA-OXY, BETA-DEOXY, T STATE 9606
107 2HBE 2 B HEMOGLOBIN A (N-BUTYL ISOCYANIDE) (BETA CHAIN) 9606
108 1Y4F 2 B, D Hemoglobin beta chain 9606
109 1XY0 2 B, D Hemoglobin beta chain 9606
110 4ROM 2 B, D Hemoglobin subunit beta 9606
111 1XZ4 2 B, D Hemoglobin beta chain 9606
112 1Y5J 2 B, D Hemoglobin beta chain 9606
113 1Y4P 2 B, D Hemoglobin beta chain 9606
114 1Y2Z 2 B, D Hemoglobin beta chain 9606
115 6BNR 2 B, D Hemoglobin subunit beta 9606
116 4X0L 2 B Hemoglobin subunit beta 9606
117 1HDB 2 B, D HEMOGLOBIN (DEOXY) BETA-V67T ALPHA-BETA-ALPHA-BETA TETRAMER 9606
118 3W4U 2 B, D, F Hemoglobin subunit beta 9606
119 1YHE 2 B, D Hemoglobin beta chain 9606
120 5U3I 2 B, D Hemoglobin subunit beta 9606
121 1XZV 2 B, D Hemoglobin beta chain 9606
122 3S65 2 B, D Hemoglobin subunit beta 9606
123 6HBW 2 B, D PROTEIN (HEMOGLOBIN BETA) 9606
124 1Y31 2 B, D Hemoglobin beta chain 9606
125 1Y0D 2 B, D Hemoglobin beta chain 9606
126 3QJC 2 B Hemoglobin subunit beta 9606
127 1Y85 2 B, D Hemoglobin beta chain RESIDUES 1-145 9606
128 1HBA 2 B, D HEMOGLOBIN ROTHSCHILD (DEOXY) (BETA CHAIN) 9606
129 1AJ9 2 B HEMOGLOBIN (BETA CHAIN) 9606
130 2HBC 2 B HEMOGLOBIN A (ETHYL ISOCYANIDE) (BETA CHAIN) 9606
131 1Y0W 2 B, D Hemoglobin beta chain 9606
132 6BWU 2 B Hemoglobin subunit beta 9606
133 1XZ5 2 B, D Hemoglobin beta chain 9606
134 1Y0T 2 B, D Hemoglobin beta chain 9606
135 1Y4Q 2 B, D Hemoglobin beta chain 9606
136 1Y35 2 B, D Hemoglobin beta chain 9606
137 1J7S 2 B, D Hemoglobin beta chain 9606
138 1Y5F 2 B, D Hemoglobin beta chain 9606
139 3WCP 2 B, D Hemoglobin subunit beta 9606
140 1A0U 2 B, D HEMOGLOBIN (BETA CHAIN) 9606
141 1RPS 2 B, D Hemoglobin beta chain 9606
142 1Y7G 2 B, D Hemoglobin beta chain 9606
143 1Y5K 2 B, D Hemoglobin beta chain 9606
144 1Y22 2 B, D Hemoglobin beta chain 9606
145 1O1K 2 B, D Hemoglobin Beta chain 9606
146 1XZU 2 B, D Hemoglobin beta chain 9606
147 1Y09 2 B, D Hemoglobin beta chain 9606
148 1RQA 2 B, D Hemoglobin beta chain 9606
149 1Y4R 2 B, D Hemoglobin beta chain 9606
150 1GZX 2 B, D HEMOGLOBIN BETA CHAIN LIGANDED T STATE 9606
151 1Y4B 2 B, D Hemoglobin beta chain 9606
152 2HHE 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
153 2HBD 2 B HEMOGLOBIN A (METHYL ISOCYANIDE) (BETA CHAIN) 9606
154 3P5Q 2 B Hemoglobin subunit beta 9606
155 1DKE 2 B, D HEMOGLOBIN: BETA CHAIN BETA HEME CONTAINS NI+2 ION 9606
156 1HGA 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
157 1HGC 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
158 2HBF 2 B HEMOGLOBIN A (N-PROPYL ISOCYANIDE) (BETA CHAIN) 9606
159 1Y0A 2 B, D Hemoglobin beta chain 9606
160 1YEV 2 B, D Hemoglobin beta chain 9606
161 1YZI 2 B Hemoglobin beta chain 9606
162 3HXN 2 B, D Hemoglobin subunit beta 9606
163 5UFJ 2 B, D Hemoglobin subunit beta 9606
164 1XYE 2 B, D Hemoglobin beta chain 9606
165 1RQ4 2 B, D Hemoglobin beta chain 9606
166 6HAL 2 B, D Hemoglobin subunit beta 9606
167 2YRS 2 B, D, K, O Hemoglobin subunit beta 9606
168 5KDQ 2 B, D Hemoglobin subunit beta 9606
169 1Y7C 2 B, D Hemoglobin beta chain 9606
170 4M4B 2 B Hemoglobin subunit beta 9606
171 6FQF 1 A, B, C, D Hemoglobin subunit beta 9606
172 1HGB 2 B, D HEMOGLOBIN (AQUO MET) (BETA CHAIN) 9606
173 1YEO 2 B, D Hemoglobin beta chain 9606
174 1Y0C 2 B, D Hemoglobin beta chain 9606
175 1YEU 2 B, D Hemoglobin beta chain 9606
176 4M4A 2 B Hemoglobin subunit beta 9606
177 1O1I 2 B Hemoglobin Beta chain 9606
178 1YH9 2 B, D Hemoglobin beta chain 9606
179 1MKO 2 B, D Hemoglobin beta chain 9606
180 1Y46 2 B, D Hemoglobin beta chain 9606
181 1LJW 2 B hemoglobin beta chain 9606
182 3ONZ 2 B Hemoglobin subunit beta Hemoglobin Chain B 9606
183 1HHO 2 B HEMOGLOBIN A (OXY) (BETA CHAIN) 9606
184 1M9P 2 B, D Hemoglobin beta chain 9606
185 1BIJ 2 B, D HEMOGLOBIN A LYS B82/D82 CROSSLINKED HEMOGLOBIN 9606
186 1HAB 2 B, D HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY FORM 9606
187 1R1X 2 B Hemoglobin beta chain 9606
188 3R5I 2 B, D Hemoglobin subunit beta 9606
189 3OO5 2 B Hemoglobin subunit beta 9606
190 1NEJ 2 B, D Hemoglobin beta chain beta chain 9606
191 4MQC 2 B Hemoglobin subunit beta 9606
192 4NI0 2 B Hemoglobin subunit beta 9606
193 1RVW 2 B HEMOGLOBIN CARBONMONXY HEMES 9606
194 1YIE 2 B, D Hemoglobin beta chain 9606
195 1B86 2 B, D PROTEIN (HEMOGLOBIN; BETA CHAIN) 2,3-DIPHOSPHOGLYCERATE COMPLEX 9606
196 5EE4 3 D, F Hemoglobin subunit beta 9606
197 1HAC 2 B, D HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY FORM 9606
198 6BB5 2 B Hemoglobin subunit beta 9606
199 5HY8 2 B, D, F, H, T Hemoglobin subunit beta 9606
200 1QXD 2 B, D Hemoglobin beta chain beta chain 9606
201 4FC3 2 B Hemoglobin subunit beta 9606
202 1ABY 2 B, D HEMOGLOBIN 9606
203 1YE0 2 B, D Hemoglobin beta chain 9606
204 3IC2 2 B, D Hemoglobin subunit beta 9606
205 4MQH 2 B Hemoglobin subunit beta 9606
206 1YHR 2 B, D Hemoglobin beta chain 9606
207 5KSJ 2 B, D Hemoglobin subunit beta 9606
208 1YFF 2 B, D, F, H Hemoglobin beta chain 9606
209 1LFQ 2 B Hemoglobin beta chain 9606
210 1LFT 2 B Hemoglobin beta chain 9606
211 3B75 2 B, D, F, H, T Hemoglobin subunit beta 9606
212 1YGF 2 B, D Hemoglobin beta chain 9606
213 1YG5 2 B, D Hemoglobin beta chain 9606
214 1LFL 2 B, D, Q, S Hemoglobin beta chain 9606
215 1YDZ 2 B, D Hemoglobin beta chain 9606
216 1YEN 2 B, D Hemoglobin beta chain 9606
217 5X2S 2 B, D, F, H, J, L Hemoglobin subunit beta 9606
218 1NIH 2 B, D HEMOGLOBIN (FERROUS CARBONMONOXY) (BETA CHAIN) 9606
219 1YGD 2 B, D Hemoglobin beta chain 9606
220 5X2U 2 B, D, F, H, J, L Hemoglobin subunit beta 9606
221 1YEQ 2 B, D Hemoglobin beta chain 9606
222 1FN3 2 B, D HEMOGLOBIN BETA CHAIN 9606
223 1Y8W 2 B, D Hemoglobin beta chain 9606
224 5HU6 2 B Hemoglobin subunit beta 9606
225 1LFV 2 B Hemoglobin beta chain 9606
226 5X2T 2 B, D, F, H, J, L Hemoglobin subunit beta 9606
227 4N7O 2 B, D, F, H, J, L Hemoglobin subunit beta UNP residues 2-147 9606
228 4XS0 2 B Hemoglobin subunit beta 9606
229 1LFZ 2 B Hemoglobin beta chain 9606
230 4N7N 2 B, D, F, H, J, L Hemoglobin subunit beta UNP residues 2-147 9606
231 1JY7 2 B, D, Q, S, V, X Hemoglobin beta chain 9606
232 5JDO 4 D Hemoglobin subunit beta 9606
233 5JDO 6 F Hemoglobin subunit beta 9606
234 5X2R 2 B, D, F, H, J, L Hemoglobin subunit beta 9606
235 3D17 2 B, D Hemoglobin subunit beta 9606
236 4N7P 2 B, D, F, H, J, L Hemoglobin subunit beta UNP residues 2-147 9606
237 1LFY 2 B Hemoglobin beta chain 9606
238 3SZK 2 B, E Hemoglobin subunit beta 9606
239 1HBS 2 B, D, F, H HEMOGLOBIN S (DEOXY) (BETA CHAIN) 9606
240 4WJG 2 1, B, G, L, Q, V Hemoglobin subunit beta 9606
241 1CMY 2 B, D HEMOGLOBIN YPSILANTI (CARBONMONOXY) (BETA CHAIN) 9606
242 3ODQ 2 B, D Hemoglobin subunit beta 9606
243 5VMM 2 B, D Hemoglobin subunit beta 9606
244 4IJ2 2 B, D Hemoglobin subunit beta 9606
245 1YE1 2 B, D Hemoglobin beta chain 9606
246 5NI1 2 B, D Hemoglobin subunit beta 9606
247 2M6Z 2 B, D Hemoglobin subunit beta 9606
248 3KMF 2 C, G Hemoglobin subunit beta 9606
249 2DXM 2 B, D Hemoglobin subunit beta 9606
250 2H35 2 B, D Hemoglobin beta subunit 9606
251 1GLI 2 B, D DEOXYHEMOGLOBIN 9606
252 1COH 2 B, D HEMOGLOBIN (COBALTOUS DEOXY) (BETA CHAIN) 9606
253 1HCO 2 B HEMOGLOBIN (CARBONMONOXY) (BETA CHAIN) 9606
254 2HCO 2 B HEMOGLOBIN (CARBONMONOXY) (BETA CHAIN) 9606