Sequence Similarity Clusters for the Entities in PDB 1MKO

Entity #1 | Chains: A,C
Hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 254 11
95 % 178 265 16 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 178 265 18
70 % 203 332 16
50 % 483 755 3
40 % 488 760 6
30 % 949 1299 6
Entity #2 | Chains: B,D
Hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 148 215 41
95 % 176 251 18 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 179 256 20
70 % 220 347 13
50 % 484 755 3
40 % 489 760 6
30 % 950 1299 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2W72 2 B, D HUMAN HEMOGLOBIN A CHAIN BETA, RESIDUES 2-147 9606
2 1IRD 2 B Hemoglobin beta chain 9606
3 2DN2 2 B, D Hemoglobin beta subunit 9606
4 2DN3 2 B Hemoglobin beta subunit 9606
5 2DN1 2 B Hemoglobin beta subunit 9606
6 1J41 2 B, D, F, H Hemoglobin beta Chain 9606
7 1J40 2 B, D, F, H Hemoglobin beta Chain 9606
8 1BAB 2 B, D HEMOGLOBIN THIONVILLE (DEOXY) (BETA CHAIN) 9606
9 3S66 2 B Hemoglobin subunit beta 9606
10 2D5Z 2 B, D Hemoglobin beta subunit 9606
11 1BZ0 2 B, D PROTEIN (HEMOGLOBIN BETA CHAIN) 9606
12 1UIW 2 B, D, F, H Hemoglobin beta chain 9606
13 1J3Y 2 B, D, F, H Hemoglobin beta Chain 9606
14 3QJD 2 B, D Hemoglobin subunit beta 9606
15 1THB 2 B, D HEMOGLOBIN A (DEOXY) (BETA CHAIN) 9606
16 1BZZ 2 B, D PROTEIN (HEMOGLOBIN BETA CHAIN) 9606
17 5WOG 2 C, D Hemoglobin subunit beta 9606
18 1J3Z 2 B, D, F, H Hemoglobin beta Chain 9606
19 1BZ1 2 B, D PROTEIN (HEMOGLOBIN BETA CHAIN) 9606
20 3NMM 2 B, D Hemoglobin subunit beta 9606
21 5WOH 2 B, D Hemoglobin subunit beta 9606
22 4HHB 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
23 1J7Y 2 B, D Hemoglobin beta chain 9606
24 1DXV 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
25 1DXT 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
26 1DXU 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
27 6BWP 2 B, D Hemoglobin subunit beta 9606
28 3DUT 2 B, D Hemoglobin subunit beta 9606
29 1SDK 2 B, D HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY 9606
30 2HHB 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
31 1QSH 2 B, D PROTEIN (HEMOGLOBIN BETA CHAIN) 9606
32 4ROL 2 B, D Hemoglobin subunit beta 9606
33 1SDL 2 B, D HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY 9606
34 1BBB 2 B, D HEMOGLOBIN A (CARBONMONOXY) (BETA CHAIN) 9606
35 1QSI 2 B, D PROTEIN (HEMOGLOBIN BETA CHAIN) 9606
36 1CBM 1 A, B, C, D HEMOGLOBIN BETA 4 (CARBONMONOXY) 9606
37 4MQG 2 B Hemoglobin subunit beta 9606
38 2D60 2 B, D Hemoglobin beta subunit 9606
39 2W6V 2 B, D HEMOGLOBIN SUBUNIT BETA CHAIN BETA, RESIDUES 2-147 9606
40 1GBU 2 B, D HEMOGLOBIN DEOXY 9606
41 1NQP 2 B, D Hemoglobin beta chain 9606
42 1QI8 2 B, D HEMOGLOBIN BETA CHAIN 9606
43 1A01 2 B, D HEMOGLOBIN (BETA CHAIN) 9606
44 1A3N 2 B, D HEMOGLOBIN (BETA CHAIN) 9606
45 3QJB 2 B Hemoglobin subunit beta 9606
46 1C7C 2 B, D PROTEIN (DEOXYHEMOGLOBIN (BETA CHAIN)) 9606
47 5E83 2 B, D Hemoglobin subunit beta 9606
48 1YE2 2 B, D Hemoglobin beta chain 9606
49 1A3O 2 B, D HEMOGLOBIN (BETA CHAIN) 9606
50 1O1O 2 B, D Hemoglobin beta chain 9606
51 5KSI 2 B, D Hemoglobin subunit beta 9606
52 5E6E 2 B Hemoglobin subunit beta 9606
53 3HHB 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
54 1R1Y 2 B, D Hemoglobin beta chain 9606
55 1K0Y 2 B, D hemoglobin beta chain 9606
56 1YVQ 2 B, D Hemoglobin beta chain 9606
57 5UCU 2 B Hemoglobin subunit beta 9606
58 1C7D 2 B, D PROTEIN (DEOXYHEMOGLOBIN (BETA CHAIN)) 9606
59 1O1P 2 B, D Hemoglobin beta chain 9606
60 1O1J 2 B, D Hemoglobin Beta chain 9606
61 1C7B 2 B, D PROTEIN (DEOXYHEMOGLOBIN (BETA CHAIN)) 9606
62 1O1N 2 B, D Hemoglobin beta chain 9606
63 3NL7 2 B Hemoglobin subunit beta 9606
64 1CBL 1 A, B, C, D HEMOGLOBIN BETA 4 (DEOXY) 9606
65 1Y4V 2 B, D Hemoglobin beta chain 9606
66 5URC 2 B, D Hemoglobin subunit beta 9606
67 1G9V 2 B, D HEMOGLOBIN BETA CHAIN 9606
68 1YVT 2 B Hemoglobin beta chain 9606
69 1CLS 2 B, D HEMOGLOBIN CROSS-LINKED DEOXY FORM 9606
70 1VWT 2 B, D HEMOGLOBIN ALPHA AQUOMET, BETA DEOXY 9606
71 1QXE 2 B, D Hemoglobin beta chain beta chain 9606
72 1RQ3 2 B, D Hemoglobin beta chain 9606
73 1XZ2 2 B, D Hemoglobin beta chain 9606
74 3QJE 2 B, D Hemoglobin subunit beta 9606
75 4L7Y 2 B, D Hemoglobin subunit beta 9606
76 5SW7 2 B Hemoglobin subunit beta 9606
77 1O1L 2 B, D Hemoglobin Beta chain 9606
78 1XZ7 2 B, D Hemoglobin beta chain 9606
79 3D7O 2 B Hemoglobin subunit beta 9606
80 3IC0 2 B, D Hemoglobin subunit beta 9606
81 1O1M 2 B, D Hemoglobin Beta chain 9606
82 1BUW 2 B, D PROTEIN (HEMOGLOBIN) THE SULFHYDRYL GROUPS OF CYSTEINE 93 OF BETA SUBUNITS ARE S-NITROSYLATED. THE HEME GROUPS ARE NITROSYLATED. 9606
83 1XXT 2 B, D Hemoglobin beta chain 9606
84 1HBB 2 B, D HEMOGLOBIN A (DEOXY) (BETA CHAIN) 9606
85 1KD2 2 B, D Hemoglobin beta chain 9606
86 1ABW 2 B, D HEMOGLOBIN-BASED BLOOD SUBSTITUTE 9606
87 5E29 2 B, D Hemoglobin subunit beta 9606
88 3WHM 2 B, F Hemoglobin subunit beta 9606
89 1A0Z 2 B, D HEMOGLOBIN (BETA CHAIN) 9606
90 1Y83 2 B, D Hemoglobin beta chain 9606
91 1A00 2 B, D HEMOGLOBIN (BETA CHAIN) 9606
92 1Y7Z 2 B, D Hemoglobin beta chain 9606
93 4N8T 2 B Hemoglobin subunit beta 9606
94 2HBS 2 B, D, F, H HEMOGLOBIN S (DEOXY), BETA CHAIN 9606
95 1Y7D 2 B, D Hemoglobin beta chain 9606
96 1Y4G 2 B, D Hemoglobin beta chain 9606
97 4MQI 2 B Hemoglobin subunit beta 9606
98 1Y45 2 B, D Hemoglobin beta chain 9606
99 4NI1 2 B Hemoglobin subunit beta 9606
100 1J7W 2 B, D hemoglobin beta chain 9606
101 2HHD 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
102 1YIH 2 B, D Hemoglobin beta chain 9606
103 1K1K 2 B HEMOGLOBIN BETA CHAIN 9606
104 3OO4 2 B Hemoglobin subunit beta 9606
105 1GBV 2 B, D HEMOGLOBIN ALPHA-OXY, BETA-DEOXY, T STATE 9606
106 2HBE 2 B HEMOGLOBIN A (N-BUTYL ISOCYANIDE) (BETA CHAIN) 9606
107 1Y4F 2 B, D Hemoglobin beta chain 9606
108 1XY0 2 B, D Hemoglobin beta chain 9606
109 4ROM 2 B, D Hemoglobin subunit beta 9606
110 1XZ4 2 B, D Hemoglobin beta chain 9606
111 1Y5J 2 B, D Hemoglobin beta chain 9606
112 1Y4P 2 B, D Hemoglobin beta chain 9606
113 1Y2Z 2 B, D Hemoglobin beta chain 9606
114 4X0L 2 B Hemoglobin subunit beta 9606
115 1HDB 2 B, D HEMOGLOBIN (DEOXY) BETA-V67T ALPHA-BETA-ALPHA-BETA TETRAMER 9606
116 3W4U 2 B, D, F Hemoglobin subunit beta 9606
117 1YHE 2 B, D Hemoglobin beta chain 9606
118 5U3I 2 B, D Hemoglobin subunit beta 9606
119 1XZV 2 B, D Hemoglobin beta chain 9606
120 3S65 2 B, D Hemoglobin subunit beta 9606
121 6HBW 2 B, D PROTEIN (HEMOGLOBIN BETA) 9606
122 1Y31 2 B, D Hemoglobin beta chain 9606
123 1Y0D 2 B, D Hemoglobin beta chain 9606
124 3QJC 2 B Hemoglobin subunit beta 9606
125 1Y85 2 B, D Hemoglobin beta chain RESIDUES 1-145 9606
126 1HBA 2 B, D HEMOGLOBIN ROTHSCHILD (DEOXY) (BETA CHAIN) 9606
127 1AJ9 2 B HEMOGLOBIN (BETA CHAIN) 9606
128 2HBC 2 B HEMOGLOBIN A (ETHYL ISOCYANIDE) (BETA CHAIN) 9606
129 1Y0W 2 B, D Hemoglobin beta chain 9606
130 6BWU 2 B Hemoglobin subunit beta 9606
131 1XZ5 2 B, D Hemoglobin beta chain 9606
132 1Y0T 2 B, D Hemoglobin beta chain 9606
133 1Y4Q 2 B, D Hemoglobin beta chain 9606
134 1Y35 2 B, D Hemoglobin beta chain 9606
135 1J7S 2 B, D Hemoglobin beta chain 9606
136 1Y5F 2 B, D Hemoglobin beta chain 9606
137 3WCP 2 B, D Hemoglobin subunit beta 9606
138 1A0U 2 B, D HEMOGLOBIN (BETA CHAIN) 9606
139 1RPS 2 B, D Hemoglobin beta chain 9606
140 1Y7G 2 B, D Hemoglobin beta chain 9606
141 1Y5K 2 B, D Hemoglobin beta chain 9606
142 1Y22 2 B, D Hemoglobin beta chain 9606
143 1O1K 2 B, D Hemoglobin Beta chain 9606
144 1XZU 2 B, D Hemoglobin beta chain 9606
145 1Y09 2 B, D Hemoglobin beta chain 9606
146 1RQA 2 B, D Hemoglobin beta chain 9606
147 1Y4R 2 B, D Hemoglobin beta chain 9606
148 1GZX 2 B, D HEMOGLOBIN BETA CHAIN LIGANDED T STATE 9606
149 1Y4B 2 B, D Hemoglobin beta chain 9606
150 2HHE 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
151 2HBD 2 B HEMOGLOBIN A (METHYL ISOCYANIDE) (BETA CHAIN) 9606
152 3P5Q 2 B Hemoglobin subunit beta 9606
153 1DKE 2 B, D HEMOGLOBIN: BETA CHAIN BETA HEME CONTAINS NI+2 ION 9606
154 1HGA 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
155 1HGC 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 9606
156 2HBF 2 B HEMOGLOBIN A (N-PROPYL ISOCYANIDE) (BETA CHAIN) 9606
157 1Y0A 2 B, D Hemoglobin beta chain 9606
158 1YEV 2 B, D Hemoglobin beta chain 9606
159 1YZI 2 B Hemoglobin beta chain 9606
160 3HXN 2 B, D Hemoglobin subunit beta 9606
161 5UFJ 2 B, D Hemoglobin subunit beta 9606
162 1XYE 2 B, D Hemoglobin beta chain 9606
163 1RQ4 2 B, D Hemoglobin beta chain 9606
164 2YRS 2 B, D, K, O Hemoglobin subunit beta 9606
165 5KDQ 2 B, D Hemoglobin subunit beta 9606
166 1Y7C 2 B, D Hemoglobin beta chain 9606
167 4M4B 2 B Hemoglobin subunit beta 9606
168 6FQF 1 A, B, C, D Hemoglobin subunit beta 9606
169 1HGB 2 B, D HEMOGLOBIN (AQUO MET) (BETA CHAIN) 9606
170 1YEO 2 B, D Hemoglobin beta chain 9606
171 1Y0C 2 B, D Hemoglobin beta chain 9606
172 1YEU 2 B, D Hemoglobin beta chain 9606
173 4M4A 2 B Hemoglobin subunit beta 9606
174 1O1I 2 B Hemoglobin Beta chain 9606
175 1YH9 2 B, D Hemoglobin beta chain 9606
176 1MKO 2 B, D Hemoglobin beta chain 9606
177 1Y46 2 B, D Hemoglobin beta chain 9606
178 1LJW 2 B hemoglobin beta chain 9606
179 3ONZ 2 B Hemoglobin subunit beta Hemoglobin Chain B 9606
180 1HHO 2 B HEMOGLOBIN A (OXY) (BETA CHAIN) 9606
181 1M9P 2 B, D Hemoglobin beta chain 9606
182 1BIJ 2 B, D HEMOGLOBIN A LYS B82/D82 CROSSLINKED HEMOGLOBIN 9606
183 1HAB 2 B, D HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY FORM 9606
184 1R1X 2 B Hemoglobin beta chain 9606
185 3R5I 2 B, D Hemoglobin subunit beta 9606
186 3OO5 2 B Hemoglobin subunit beta 9606
187 1NEJ 2 B, D Hemoglobin beta chain beta chain 9606
188 4MQC 2 B Hemoglobin subunit beta 9606
189 4NI0 2 B Hemoglobin subunit beta 9606
190 1RVW 2 B HEMOGLOBIN CARBONMONXY HEMES 9606
191 1YIE 2 B, D Hemoglobin beta chain 9606
192 1B86 2 B, D PROTEIN (HEMOGLOBIN; BETA CHAIN) 2,3-DIPHOSPHOGLYCERATE COMPLEX 9606
193 5EE4 3 D, F Hemoglobin subunit beta 9606
194 1HAC 2 B, D HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY FORM 9606
195 6BB5 2 B Hemoglobin subunit beta 9606
196 5HY8 2 B, D, F, H, T Hemoglobin subunit beta 9606
197 1QXD 2 B, D Hemoglobin beta chain beta chain 9606
198 4FC3 2 B Hemoglobin subunit beta 9606
199 1ABY 2 B, D HEMOGLOBIN 9606
200 1YE0 2 B, D Hemoglobin beta chain 9606
201 3IC2 2 B, D Hemoglobin subunit beta 9606
202 4MQH 2 B Hemoglobin subunit beta 9606
203 1YHR 2 B, D Hemoglobin beta chain 9606
204 5KSJ 2 B, D Hemoglobin subunit beta 9606
205 1YFF 2 B, D, F, H Hemoglobin beta chain 9606
206 1LFQ 2 B Hemoglobin beta chain 9606
207 1LFT 2 B Hemoglobin beta chain 9606
208 3B75 2 B, D, F, H, T Hemoglobin subunit beta 9606
209 1YGF 2 B, D Hemoglobin beta chain 9606
210 1YG5 2 B, D Hemoglobin beta chain 9606
211 1LFL 2 B, D, Q, S Hemoglobin beta chain 9606
212 1YDZ 2 B, D Hemoglobin beta chain 9606
213 1YEN 2 B, D Hemoglobin beta chain 9606
214 5X2S 2 B, D, F, H, J, L Hemoglobin subunit beta 9606
215 1NIH 2 B, D HEMOGLOBIN (FERROUS CARBONMONOXY) (BETA CHAIN) 9606
216 1YGD 2 B, D Hemoglobin beta chain 9606
217 5X2U 2 B, D, F, H, J, L Hemoglobin subunit beta 9606
218 1YEQ 2 B, D Hemoglobin beta chain 9606
219 1FN3 2 B, D HEMOGLOBIN BETA CHAIN 9606
220 1Y8W 2 B, D Hemoglobin beta chain 9606
221 5HU6 2 B Hemoglobin subunit beta 9606
222 1LFV 2 B Hemoglobin beta chain 9606
223 5X2T 2 B, D, F, H, J, L Hemoglobin subunit beta 9606
224 4N7O 2 B, D, F, H, J, L Hemoglobin subunit beta UNP residues 2-147 9606
225 4XS0 2 B Hemoglobin subunit beta 9606
226 1LFZ 2 B Hemoglobin beta chain 9606
227 4N7N 2 B, D, F, H, J, L Hemoglobin subunit beta UNP residues 2-147 9606
228 1JY7 2 B, D, Q, S, V, X Hemoglobin beta chain 9606
229 5JDO 4 D Hemoglobin subunit beta 9606
230 5JDO 6 F Hemoglobin subunit beta 9606
231 5X2R 2 B, D, F, H, J, L Hemoglobin subunit beta 9606
232 3D17 2 B, D Hemoglobin subunit beta 9606
233 4N7P 2 B, D, F, H, J, L Hemoglobin subunit beta UNP residues 2-147 9606
234 1LFY 2 B Hemoglobin beta chain 9606
235 3SZK 2 B, E Hemoglobin subunit beta 9606
236 1HBS 2 B, D, F, H HEMOGLOBIN S (DEOXY) (BETA CHAIN) 9606
237 4WJG 2 1, B, G, L, Q, V Hemoglobin subunit beta 9606
238 1CMY 2 B, D HEMOGLOBIN YPSILANTI (CARBONMONOXY) (BETA CHAIN) 9606
239 3ODQ 2 B, D Hemoglobin subunit beta 9606
240 5VMM 2 B, D Hemoglobin subunit beta 9606
241 4IJ2 2 B, D Hemoglobin subunit beta 9606
242 1YE1 2 B, D Hemoglobin beta chain 9606
243 5NI1 2 B, D Hemoglobin subunit beta 9606
244 2M6Z 2 B, D Hemoglobin subunit beta 9606
245 3KMF 2 C, G Hemoglobin subunit beta 9606
246 2DXM 2 B, D Hemoglobin subunit beta 9606
247 2H35 2 B, D Hemoglobin beta subunit 9606
248 1GLI 2 B, D DEOXYHEMOGLOBIN 9606
249 1COH 2 B, D HEMOGLOBIN (COBALTOUS DEOXY) (BETA CHAIN) 9606
250 1HCO 2 B HEMOGLOBIN (CARBONMONOXY) (BETA CHAIN) 9606
251 2HCO 2 B HEMOGLOBIN (CARBONMONOXY) (BETA CHAIN) 9606