Sequence Similarity Clusters for the Entities in PDB 1MKO

Entity #1 | Chains: A,C
Hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 172 257 12
95 % 181 268 17 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.8
PDBFlex
90 % 181 268 19
70 % 206 335 18
50 % 489 761 4
40 % 494 766 7
30 % 967 1319 6
Entity #2 | Chains: B,D
Hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 151 218 42
95 % 179 254 23 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 182 259 20
70 % 223 350 14
50 % 490 761 4
40 % 495 766 7
30 % 968 1319 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2W72 1 A HUMAN HEMOGLOBIN A CHAIN ALPHA, RESIDUES 2-142 9606
2 2W72 3 C HUMAN HEMOGLOBIN A CHAIN ALPHA, RESIDUES 2-142 9606
3 1IRD 1 A Hemoglobin alpha chain 9606
4 2DN2 1 A, C Hemoglobin alpha subunit 9606
5 2DN3 1 A Hemoglobin alpha subunit 9606
6 2DN1 1 A Hemoglobin alpha subunit 9606
7 1J41 1 A, C, E, G Hemoglobin alpha Chain 9606
8 1J40 1 A, C, E, G Hemoglobin alpha Chain 9606
9 1BAB 1 A, C HEMOGLOBIN THIONVILLE (DEOXY) (ALPHA CHAIN) 9606
10 3S66 1 A Hemoglobin subunit alpha 9606
11 2D5Z 1 A, C Hemoglobin alpha subunit 9606
12 1BZ0 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
13 5EUI 1 A HBA protein 9978
14 1UIW 1 A, C, E, G Hemoglobin alpha chain 9606
15 1J3Y 1 A, C, E, G Hemoglobin alpha Chain 9606
16 3QJD 1 A, C Hemoglobin subunit alpha 9606
17 1THB 1 A, C HEMOGLOBIN A (OXY) (ALPHA CHAIN) 9606
18 1BZZ 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
19 5WOG 1 A, B Hemoglobin subunit alpha 9606
20 1J3Z 1 A, C, E, G Hemoglobin alpha Chain 9606
21 1BZ1 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
22 3NMM 1 A, C Hemoglobin subunit alpha 9606
23 5WOH 1 A, C Hemoglobin subunit alpha 9606
24 4HHB 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
25 1J7Y 1 A, C Hemoglobin alpha chain 9606
26 1DXV 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
27 1DXT 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
28 1DXU 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
29 6BWP 1 A, C Hemoglobin subunit alpha 9606
30 3DUT 1 A, C Hemoglobin subunit alpha 9606
31 1SDK 1 A, C HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY 9606
32 2HHB 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
33 1QSH 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
34 4ROL 1 A, C Hemoglobin subunit alpha 9606
35 1SDL 1 A, C HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY 9606
36 1BBB 1 A, C HEMOGLOBIN A (CARBONMONOXY) (ALPHA CHAIN) 9606
37 1QSI 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
38 4MQG 1 A Hemoglobin subunit alpha 9606
39 2QSS 1 A, C Hemoglobin subunit alpha 9913
40 2D60 1 A, C Hemoglobin alpha subunit 9606
41 2W6V 1 A, C HEMOGLOBIN SUBUNIT ALPHA CHAIN ALPHA, RESIDUES 2-142 9606
42 1GBU 1 A, C HEMOGLOBIN DEOXY 9606
43 1NQP 1 A, C Hemoglobin alpha chain 9606
44 1QI8 1 A, C HEMOGLOBIN ALPHA CHAIN 9606
45 1A01 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
46 1A3N 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
47 3QJB 1 A Hemoglobin subunit alpha 9606
48 5E83 1 A, C Hemoglobin subunit alpha 9606
49 1YE2 1 A, C Hemoglobin alpha chain 9606
50 1A3O 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
51 1O1O 1 A, C Hemoglobin Alpha chain 9606
52 5KSI 1 A, C Hemoglobin subunit alpha 9606
53 5E6E 1 A Hemoglobin subunit alpha 9606
54 4MQJ 1 A, C, E, G Hemoglobin subunit alpha 9606
55 3HHB 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
56 1R1Y 1 A, C Hemoglobin alpha chain 9606
57 1K0Y 1 A, C hemoglobin alpha chain 9606
58 1YVQ 1 A, C Hemoglobin alpha chain 9606
59 5UCU 1 A Hemoglobin subunit alpha 9606
60 1C7B 1 A, C PROTEIN (DEOXYHEMOGLOBIN (ALPHA CHAIN)) 9606
61 3NL7 1 A Hemoglobin subunit alpha 9606
62 1SHR 1 A, C Hemoglobin alpha chain 9606
63 1Y4V 1 A, C Hemoglobin alpha chain 9606
64 5URC 1 A, C Hemoglobin subunit alpha 9606
65 1G9V 1 A, C HEMOGLOBIN ALPHA CHAIN 9606
66 1YVT 1 A Hemoglobin alpha chain 9606
67 1CLS 1 A, C HEMOGLOBIN CROSS-LINKED DEOXY FORM 9606
68 1VWT 1 A, C HEMOGLOBIN ALPHA AQUOMET, BETA DEOXY 9606
69 1QXE 1 A, C Hemoglobin alpha chain alpha chain 9606
70 1RQ3 1 A, C Hemoglobin alpha chain 9606
71 1XZ2 1 A, C Hemoglobin alpha chain 9606
72 3QJE 1 A, C Hemoglobin subunit alpha 9606
73 4L7Y 1 A, C Hemoglobin subunit alpha 9606
74 5SW7 1 A Hemoglobin subunit alpha 9606
75 2QSP 1 A, C Hemoglobin subunit alpha 9913
76 1XZ7 1 A, C Hemoglobin alpha chain 9606
77 3D7O 1 A Hemoglobin subunit alpha 9606
78 3IC0 1 A, C Hemoglobin subunit alpha 9606
79 1BUW 1 A, C PROTEIN (HEMOGLOBIN) THE SULFHYDRYL GROUPS OF CYSTEINE 93 OF BETA SUBUNITS ARE S-NITROSYLATED. THE HEME GROUPS ARE NITROSYLATED. 9606
80 1XXT 1 A, C Hemoglobin alpha chain 9606
81 1HBB 1 A, C HEMOGLOBIN A (DEOXY) (ALPHA CHAIN) 9606
82 1KD2 1 A, C Hemoglobin alpha chain 9606
83 5E29 1 A, C Hemoglobin subunit alpha 9606
84 3WHM 1 A, E Hemoglobin subunit alpha 9606
85 1A0Z 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
86 6DI4 1 A, C Hemoglobin subunit alpha 9606
87 1Y83 1 A, C Hemoglobin alpha chain 9606
88 1A00 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
89 1G08 1 A, C HEMOGLOBIN ALPHA CHAIN 9913
90 1Y7Z 1 A, C Hemoglobin alpha chain 9606
91 2RAO 1 A, C Hemoglobin subunit alpha-1/2 9986
92 4N8T 1 A Hemoglobin subunit alpha 9606
93 2HBS 1 A, C, E, G HEMOGLOBIN S (DEOXY), ALPHA CHAIN 9606
94 1Y7D 1 A, C Hemoglobin alpha chain 9606
95 1Y4G 1 A, C Hemoglobin alpha chain 9606
96 4MQI 1 A Hemoglobin subunit alpha 9606
97 1Y45 1 A, C Hemoglobin alpha chain 9606
98 4NI1 1 A Hemoglobin subunit alpha 9606
99 1J7W 1 A, C hemoglobin alpha chain 9606
100 2HHD 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
101 1YIH 1 A, C Hemoglobin alpha chain 9606
102 1K1K 1 A HEMOGLOBIN ALPHA CHAIN 9606
103 3OO4 1 A Hemoglobin subunit alpha 9606
104 1GBV 1 A, C HEMOGLOBIN ALPHA-OXY, BETA-DEOXY, T STATE 9606
105 2HBE 1 A HEMOGLOBIN A (N-BUTYL ISOCYANIDE) (ALPHA CHAIN) 9606
106 1Y4F 1 A, C Hemoglobin alpha chain 9606
107 1XY0 1 A, C Hemoglobin alpha chain 9606
108 4ROM 1 A, C Hemoglobin subunit alpha 9606
109 1XZ4 1 A, C Hemoglobin alpha chain 9606
110 1Y5J 1 A, C Hemoglobin alpha chain 9606
111 1Y4P 1 A, C Hemoglobin alpha chain 9606
112 1Y2Z 1 A, C Hemoglobin alpha chain 9606
113 6BNR 1 A, C Hemoglobin subunit alpha 9606
114 4X0L 1 A Hemoglobin subunit alpha 9606
115 1HDB 1 A, C HEMOGLOBIN (DEOXY) BETA-V67T ALPHA-BETA-ALPHA-BETA TETRAMER 9606
116 1YHE 1 A, C Hemoglobin alpha chain 9606
117 5U3I 1 A, C Hemoglobin subunit alpha 9606
118 1XZV 1 A, C Hemoglobin alpha chain 9606
119 3S65 1 A, C Hemoglobin subunit alpha 9606
120 6HBW 1 A, C PROTEIN (HEMOGLOBIN ALPHA 1) 9606
121 1Y31 1 A, C Hemoglobin alpha chain 9606
122 1G0A 1 A, C HEMOGLOBIN ALPHA CHAIN 9913
123 1Y0D 1 A, C Hemoglobin alpha chain Residues 1-140 9606
124 3QJC 1 A Hemoglobin subunit alpha 9606
125 1Y85 1 A, C Hemoglobin alpha chain 9606
126 1HBA 1 A, C HEMOGLOBIN ROTHSCHILD (DEOXY) (ALPHA CHAIN) 9606
127 1AJ9 1 A HEMOGLOBIN (ALPHA CHAIN) 9606
128 3CY5 1 A, C Hemoglobin subunit alpha-2 89462
129 2HBC 1 A HEMOGLOBIN A (ETHYL ISOCYANIDE) (ALPHA CHAIN) 9606
130 1Y0W 1 A, C Hemoglobin alpha chain 9606
131 6BWU 1 A Hemoglobin subunit alpha 9606
132 1XZ5 1 A, C Hemoglobin alpha chain 9606
133 1Y0T 1 A, C Hemoglobin alpha chain 9606
134 1Y4Q 1 A, C Hemoglobin alpha chain 9606
135 1Y35 1 A, C Hemoglobin alpha chain 9606
136 1J7S 1 A, C Hemoglobin alpha chain 9606
137 1Y5F 1 A, C Hemoglobin alpha chain 9606
138 3WCP 1 A, C Hemoglobin subunit alpha 9606
139 1G09 1 A, C HEMOGLOBIN ALPHA CHAIN 9913
140 1A0U 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
141 1RPS 1 A, C Hemoglobin alpha chain 9606
142 1Y7G 1 A, C Hemoglobin alpha chain 9606
143 1Y5K 1 A, C Hemoglobin alpha chain 9606
144 1Y22 1 A, C Hemoglobin alpha chain 9606
145 1O1K 1 A, C Hemoglobin Alpha chain 9606
146 1XZU 1 A, C Hemoglobin alpha chain 9606
147 1Y09 1 A, C Hemoglobin alpha chain 9606
148 3PIA 1 A, C Hemoglobin subunit alpha 9913
149 1RQA 1 A, C Hemoglobin alpha chain 9606
150 1Y4R 1 A, C Hemoglobin alpha chain 9606
151 1GZX 1 A, C HEMOGLOBIN ALPHA CHAIN LIGANDED T STATE 9606
152 1Y4B 1 A, C Hemoglobin alpha chain 9606
153 2HHE 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
154 2HBD 1 A HEMOGLOBIN A (METHYL ISOCYANIDE) (ALPHA CHAIN) 9606
155 3P5Q 1 A Hemoglobin subunit alpha 9606
156 1DKE 1 A, C HEMOGLOBIN: ALPHA CHAIN 9606
157 1HGA 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
158 1HGC 1 A, C HEMOGLOBIN (OXY) (ALPHA CHAIN) 9606
159 2HBF 1 A HEMOGLOBIN A (N-PROPYL ISOCYANIDE) (ALPHA CHAIN) 9606
160 1Y0A 1 A, C Hemoglobin alpha chain 9606
161 1YEV 1 A, C Hemoglobin alpha chain 9606
162 1YZI 1 A Hemoglobin alpha chain 9606
163 3HXN 1 A, C Hemoglobin subunit alpha 9606
164 5UFJ 1 A, C Hemoglobin subunit alpha 9606
165 1XYE 1 A, C Hemoglobin alpha chain 9606
166 1RQ4 1 A, C Hemoglobin alpha chain 9606
167 6HAL 1 A, C Hemoglobin subunit alpha 9606
168 2YRS 1 A, C, I, M Hemoglobin subunit alpha 9606
169 5KDQ 1 A, C Hemoglobin subunit alpha 9606
170 1Y7C 1 A, C Hemoglobin alpha chain 9606
171 4MQK 1 A, C, E, G Hemoglobin subunit alpha 9606
172 4M4B 1 A Hemoglobin subunit alpha 9606
173 1FSX 1 A, C HEMOGLOBIN ALPHA CHAIN 9913
174 1HGB 1 A, C HEMOGLOBIN (AQUO MET) (ALPHA CHAIN) 9606
175 1YEO 1 A, C Hemoglobin alpha chain 9606
176 1Y0C 1 A, C Hemoglobin alpha chain 9606
177 1YEU 1 A, C Hemoglobin alpha chain 9606
178 4M4A 1 A Hemoglobin subunit alpha 9606
179 1O1I 1 A Hemoglobin Alpha chain 9606
180 1YH9 1 A, C Hemoglobin alpha chain 9606
181 1MKO 1 A, C Hemoglobin alpha chain 9606
182 1Y46 1 A, C Hemoglobin alpha chain 9606
183 1LJW 1 A hemoglobin alpha chain 9606
184 3ONZ 1 A Hemoglobin subunit alpha Hemoglobin Chain A 9606
185 1HHO 1 A HEMOGLOBIN A (OXY) (ALPHA CHAIN) 9606
186 1M9P 1 A, C Hemoglobin alpha chain 9606
187 1BIJ 1 A, C HEMOGLOBIN A LYS B82/D82 CROSSLINKED HEMOGLOBIN 9606
188 1HAB 1 A, C HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY FORM 9606
189 1R1X 1 A Hemoglobin alpha chain 9606
190 3R5I 1 A, C Hemoglobin subunit alpha 9606
191 3OO5 1 A Hemoglobin subunit alpha 9606
192 1NEJ 1 A, C Hemoglobin alpha chain alpha chain 9606
193 4MQC 1 A Hemoglobin subunit alpha 9606
194 4NI0 1 A Hemoglobin subunit alpha 9606
195 1SI4 1 A, C Hemoglobin alpha chain 9606
196 1RVW 1 A HEMOGLOBIN CARBONMONXY HEMES 9606
197 1YIE 1 A, C Hemoglobin alpha chain 9606
198 1B86 1 A, C PROTEIN (HEMOGLOBIN; ALPHA CHAIN) 9606
199 5EE4 2 C, E Hemoglobin subunit alpha 9606
200 1HAC 1 A, C HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY FORM 9606
201 6BB5 1 A Hemoglobin subunit alpha 9606
202 5HY8 1 A, C, E, G, S Hemoglobin subunit alpha 9606
203 1QXD 1 A, C Hemoglobin alpha chain alpha chain 9606
204 3PI8 1 A, C Hemoglobin subunit alpha 9913
205 4FC3 1 A Hemoglobin subunit alpha 9606
206 1YE0 1 A, C Hemoglobin alpha chain 9606
207 3IC2 1 A, C Hemoglobin subunit alpha 9606
208 4MQH 1 A Hemoglobin subunit alpha 9606
209 1YHR 1 A, C Hemoglobin alpha chain 9606
210 5KSJ 1 A, C Hemoglobin subunit alpha 9606
211 1Z8U 2 B, D Hemoglobin alpha chain 9606
212 1YFF 1 A, C, E, G Hemoglobin alpha chain 9606
213 1LFQ 1 A Hemoglobin alpha chain 9606
214 1LFT 1 A Hemoglobin alpha chain 9606
215 3B75 1 A, C, E, G, S Hemoglobin subunit alpha 9606
216 1YGF 1 A, C Hemoglobin alpha chain 9606
217 1YG5 1 A, C Hemoglobin alpha chain 9606
218 1LFL 1 A, C, P, R Hemoglobin alpha chain 9606
219 1YDZ 1 A, C Hemoglobin alpha chain 9606
220 1YEN 1 A, C Hemoglobin alpha chain 9606
221 5X2S 1 A, C, E, G, I, K Hemoglobin subunit alpha 9606
222 1NIH 1 A, C HEMOGLOBIN (NICKELOUS DEOXY) (ALPHA CHAIN) 9606
223 1YGD 1 A, C Hemoglobin alpha chain 9606
224 5X2U 1 A, C, E, G, I, K Hemoglobin subunit alpha 9606
225 1A9W 1 A, C HEMOGLOBIN (ALPHA CHAIN) HUMAN GOWER II EMBRYONIC HEMOGLOBIN 9606
226 1YEQ 1 A, C Hemoglobin alpha chain 9606
227 1FN3 1 A, C HEMOGLOBIN ALPHA CHAIN 9606
228 1Y8W 1 A, C Hemoglobin alpha chain 9606
229 5HU6 1 A Hemoglobin subunit alpha 9606
230 1LFV 1 A Hemoglobin alpha chain 9606
231 5X2T 1 A, C, E, G, I, K Hemoglobin subunit alpha 9606
232 4N7O 1 A, C, E, G, I, K Hemoglobin subunit alpha UNP residues 2-142 9606
233 3LQD 1 A, C Hemoglobin subunit alpha 9983
234 4XS0 1 A Hemoglobin subunit alpha 9606
235 1LFZ 1 A Hemoglobin alpha chain 9606
236 4N7N 1 A, C, E, G, I, K Hemoglobin subunit alpha UNP residues 2-142 9606
237 1JY7 1 A, C, P, R, U, W Hemoglobin alpha chain 9606
238 5JDO 3 C Hemoglobin subunit alpha 9606
239 5JDO 5 E Hemoglobin subunit alpha 9606
240 5X2R 1 A, C, E, G, I, K Hemoglobin subunit alpha 9606
241 3D17 1 A, C Hemoglobin subunit alpha 9606
242 3OVU 3 C Hemoglobin subunit alpha 9606
243 4N7P 1 A, C, E, G, I, K Hemoglobin subunit alpha UNP residues 2-142 9606
244 1LFY 1 A Hemoglobin alpha chain 9606
245 3S48 2 C, D Hemoglobin subunit alpha 9606
246 3SZK 1 A, D Hemoglobin subunit alpha 9606
247 1Y01 2 B Hemoglobin alpha chain 9606
248 3IA3 2 B, D Hemoglobin subunit alpha 9606
249 3PI9 1 A, C Hemoglobin subunit alpha 9913
250 1HBS 1 A, C, E, G HEMOGLOBIN S (DEOXY) (ALPHA CHAIN) 9606
251 4WJG 1 A, F, K, P, U, Z Hemoglobin subunit alpha 9606
252 1CMY 1 A, C HEMOGLOBIN YPSILANTI (CARBONMONOXY) (ALPHA CHAIN) 9606
253 3ODQ 1 A, C Hemoglobin subunit alpha 9606
254 5VMM 1 A, C Hemoglobin subunit alpha 9606
255 3CIU 1 A, C Hemoglobin subunit alpha 9913
256 4IJ2 1 A, C Hemoglobin subunit alpha 9606
257 1YE1 1 A, C Hemoglobin alpha chain 9606
258 5NI1 1 A, C Hemoglobin subunit alpha 9606
259 2M6Z 1 A, C Hemoglobin subunit alpha 9606
260 3KMF 1 A, E Hemoglobin subunit alpha 9606
261 2DXM 1 A, C Hemoglobin subunit alpha 9606
262 2H35 1 A, C Hemoglobin alpha subunit 9606
263 1GLI 1 A, C DEOXYHEMOGLOBIN 9606
264 1HDA 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9913
265 1COH 1 A, C HEMOGLOBIN (FERROUS CARBONMONOXY) (ALPHA CHAIN) 9606
266 1HCO 1 A HEMOGLOBIN (CARBONMONOXY) (ALPHA CHAIN) 9606
267 2HCO 1 A HEMOGLOBIN (CARBONMONOXY) (ALPHA CHAIN) 9606
268 1FDH 1 A, B HEMOGLOBIN F (DEOXY) (ALPHA CHAIN) 9606