Sequence Similarity Clusters for the Entities in PDB 1MKO

Entity #1 | Chains: A,C
Hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 254 11
95 % 178 265 16 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 178 265 18
70 % 203 332 16
50 % 483 755 3
40 % 488 760 6
30 % 949 1299 6
Entity #2 | Chains: B,D
Hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 148 215 41
95 % 176 251 18 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 179 256 20
70 % 220 347 13
50 % 484 755 3
40 % 489 760 6
30 % 950 1299 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1IRD 1 A Hemoglobin alpha chain 9606
2 2DN2 1 A, C Hemoglobin alpha subunit 9606
3 2DN3 1 A Hemoglobin alpha subunit 9606
4 2DN1 1 A Hemoglobin alpha subunit 9606
5 1J41 1 A, C, E, G Hemoglobin alpha Chain 9606
6 1J40 1 A, C, E, G Hemoglobin alpha Chain 9606
7 1BAB 1 A, C HEMOGLOBIN THIONVILLE (DEOXY) (ALPHA CHAIN) 9606
8 3S66 1 A Hemoglobin subunit alpha 9606
9 2D5Z 1 A, C Hemoglobin alpha subunit 9606
10 1BZ0 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
11 5EUI 1 A HBA protein 9978
12 1UIW 1 A, C, E, G Hemoglobin alpha chain 9606
13 1J3Y 1 A, C, E, G Hemoglobin alpha Chain 9606
14 3QJD 1 A, C Hemoglobin subunit alpha 9606
15 1THB 1 A, C HEMOGLOBIN A (OXY) (ALPHA CHAIN) 9606
16 1BZZ 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
17 5WOG 1 A, B Hemoglobin subunit alpha 9606
18 1J3Z 1 A, C, E, G Hemoglobin alpha Chain 9606
19 1BZ1 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
20 3NMM 1 A, C Hemoglobin subunit alpha 9606
21 5WOH 1 A, C Hemoglobin subunit alpha 9606
22 4HHB 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
23 1DXV 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
24 1DXT 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
25 1DXU 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
26 6BWP 1 A, C Hemoglobin subunit alpha 9606
27 3DUT 1 A, C Hemoglobin subunit alpha 9606
28 1SDK 1 A, C HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY 9606
29 2HHB 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
30 1QSH 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
31 4ROL 1 A, C Hemoglobin subunit alpha 9606
32 1SDL 1 A, C HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY 9606
33 1BBB 1 A, C HEMOGLOBIN A (CARBONMONOXY) (ALPHA CHAIN) 9606
34 1QSI 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
35 4MQG 1 A Hemoglobin subunit alpha 9606
36 2QSS 1 A, C Hemoglobin subunit alpha 9913
37 2D60 1 A, C Hemoglobin alpha subunit 9606
38 2W6V 1 A, C HEMOGLOBIN SUBUNIT ALPHA CHAIN ALPHA, RESIDUES 2-142 9606
39 1GBU 1 A, C HEMOGLOBIN DEOXY 9606
40 1NQP 1 A, C Hemoglobin alpha chain 9606
41 1A01 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
42 1A3N 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
43 3QJB 1 A Hemoglobin subunit alpha 9606
44 5E83 1 A, C Hemoglobin subunit alpha 9606
45 1YE2 1 A, C Hemoglobin alpha chain 9606
46 1A3O 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
47 1O1O 1 A, C Hemoglobin Alpha chain 9606
48 5KSI 1 A, C Hemoglobin subunit alpha 9606
49 5E6E 1 A Hemoglobin subunit alpha 9606
50 4MQJ 1 A, C, E, G Hemoglobin subunit alpha 9606
51 3HHB 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
52 1R1Y 1 A, C Hemoglobin alpha chain 9606
53 1K0Y 1 A, C hemoglobin alpha chain 9606
54 1YVQ 1 A, C Hemoglobin alpha chain 9606
55 5UCU 1 A Hemoglobin subunit alpha 9606
56 1C7B 1 A, C PROTEIN (DEOXYHEMOGLOBIN (ALPHA CHAIN)) 9606
57 3NL7 1 A Hemoglobin subunit alpha 9606
58 1SHR 1 A, C Hemoglobin alpha chain 9606
59 1Y4V 1 A, C Hemoglobin alpha chain 9606
60 5URC 1 A, C Hemoglobin subunit alpha 9606
61 1G9V 1 A, C HEMOGLOBIN ALPHA CHAIN 9606
62 1YVT 1 A Hemoglobin alpha chain 9606
63 1CLS 1 A, C HEMOGLOBIN CROSS-LINKED DEOXY FORM 9606
64 1VWT 1 A, C HEMOGLOBIN ALPHA AQUOMET, BETA DEOXY 9606
65 1QXE 1 A, C Hemoglobin alpha chain alpha chain 9606
66 1RQ3 1 A, C Hemoglobin alpha chain 9606
67 1XZ2 1 A, C Hemoglobin alpha chain 9606
68 3QJE 1 A, C Hemoglobin subunit alpha 9606
69 4L7Y 1 A, C Hemoglobin subunit alpha 9606
70 5SW7 1 A Hemoglobin subunit alpha 9606
71 2QSP 1 A, C Hemoglobin subunit alpha 9913
72 1XZ7 1 A, C Hemoglobin alpha chain 9606
73 3D7O 1 A Hemoglobin subunit alpha 9606
74 3IC0 1 A, C Hemoglobin subunit alpha 9606
75 1BUW 1 A, C PROTEIN (HEMOGLOBIN) THE SULFHYDRYL GROUPS OF CYSTEINE 93 OF BETA SUBUNITS ARE S-NITROSYLATED. THE HEME GROUPS ARE NITROSYLATED. 9606
76 1XXT 1 A, C Hemoglobin alpha chain 9606
77 1HBB 1 A, C HEMOGLOBIN A (DEOXY) (ALPHA CHAIN) 9606
78 1KD2 1 A, C Hemoglobin alpha chain 9606
79 5E29 1 A, C Hemoglobin subunit alpha 9606
80 3WHM 1 A, E Hemoglobin subunit alpha 9606
81 1A0Z 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
82 1Y83 1 A, C Hemoglobin alpha chain 9606
83 1A00 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
84 1G08 1 A, C HEMOGLOBIN ALPHA CHAIN 9913
85 1Y7Z 1 A, C Hemoglobin alpha chain 9606
86 2RAO 1 A, C Hemoglobin subunit alpha-1/2 9986
87 4N8T 1 A Hemoglobin subunit alpha 9606
88 2HBS 1 A, C, E, G HEMOGLOBIN S (DEOXY), ALPHA CHAIN 9606
89 1Y7D 1 A, C Hemoglobin alpha chain 9606
90 1Y4G 1 A, C Hemoglobin alpha chain 9606
91 4MQI 1 A Hemoglobin subunit alpha 9606
92 1Y45 1 A, C Hemoglobin alpha chain 9606
93 4NI1 1 A Hemoglobin subunit alpha 9606
94 1J7W 1 A, C hemoglobin alpha chain 9606
95 2HHD 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
96 1YIH 1 A, C Hemoglobin alpha chain 9606
97 1K1K 1 A HEMOGLOBIN ALPHA CHAIN 9606
98 3OO4 1 A Hemoglobin subunit alpha 9606
99 1GBV 1 A, C HEMOGLOBIN ALPHA-OXY, BETA-DEOXY, T STATE 9606
100 2HBE 1 A HEMOGLOBIN A (N-BUTYL ISOCYANIDE) (ALPHA CHAIN) 9606
101 1Y4F 1 A, C Hemoglobin alpha chain 9606
102 1XY0 1 A, C Hemoglobin alpha chain 9606
103 4ROM 1 A, C Hemoglobin subunit alpha 9606
104 1Y5J 1 A, C Hemoglobin alpha chain 9606
105 1Y4P 1 A, C Hemoglobin alpha chain 9606
106 1Y2Z 1 A, C Hemoglobin alpha chain 9606
107 4X0L 1 A Hemoglobin subunit alpha 9606
108 1HDB 1 A, C HEMOGLOBIN (DEOXY) BETA-V67T ALPHA-BETA-ALPHA-BETA TETRAMER 9606
109 1YHE 1 A, C Hemoglobin alpha chain 9606
110 5U3I 1 A, C Hemoglobin subunit alpha 9606
111 1XZV 1 A, C Hemoglobin alpha chain 9606
112 3S65 1 A, C Hemoglobin subunit alpha 9606
113 6HBW 1 A, C PROTEIN (HEMOGLOBIN ALPHA 1) 9606
114 1Y31 1 A, C Hemoglobin alpha chain 9606
115 1G0A 1 A, C HEMOGLOBIN ALPHA CHAIN 9913
116 1Y0D 1 A, C Hemoglobin alpha chain Residues 1-140 9606
117 3QJC 1 A Hemoglobin subunit alpha 9606
118 1Y85 1 A, C Hemoglobin alpha chain 9606
119 1HBA 1 A, C HEMOGLOBIN ROTHSCHILD (DEOXY) (ALPHA CHAIN) 9606
120 1AJ9 1 A HEMOGLOBIN (ALPHA CHAIN) 9606
121 3CY5 1 A, C Hemoglobin subunit alpha-2 89462
122 2HBC 1 A HEMOGLOBIN A (ETHYL ISOCYANIDE) (ALPHA CHAIN) 9606
123 1Y0W 1 A, C Hemoglobin alpha chain 9606
124 6BWU 1 A Hemoglobin subunit alpha 9606
125 1Y0T 1 A, C Hemoglobin alpha chain 9606
126 1Y4Q 1 A, C Hemoglobin alpha chain 9606
127 1Y35 1 A, C Hemoglobin alpha chain 9606
128 1Y5F 1 A, C Hemoglobin alpha chain 9606
129 3WCP 1 A, C Hemoglobin subunit alpha 9606
130 1G09 1 A, C HEMOGLOBIN ALPHA CHAIN 9913
131 1A0U 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
132 1RPS 1 A, C Hemoglobin alpha chain 9606
133 1Y7G 1 A, C Hemoglobin alpha chain 9606
134 1Y5K 1 A, C Hemoglobin alpha chain 9606
135 1Y22 1 A, C Hemoglobin alpha chain 9606
136 1O1K 1 A, C Hemoglobin Alpha chain 9606
137 1XZU 1 A, C Hemoglobin alpha chain 9606
138 1Y09 1 A, C Hemoglobin alpha chain 9606
139 3PIA 1 A, C Hemoglobin subunit alpha 9913
140 1RQA 1 A, C Hemoglobin alpha chain 9606
141 1Y4R 1 A, C Hemoglobin alpha chain 9606
142 1GZX 1 A, C HEMOGLOBIN ALPHA CHAIN LIGANDED T STATE 9606
143 1Y4B 1 A, C Hemoglobin alpha chain 9606
144 2HHE 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
145 2HBD 1 A HEMOGLOBIN A (METHYL ISOCYANIDE) (ALPHA CHAIN) 9606
146 3P5Q 1 A Hemoglobin subunit alpha 9606
147 1DKE 1 A, C HEMOGLOBIN: ALPHA CHAIN 9606
148 1HGA 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
149 1HGC 1 A, C HEMOGLOBIN (OXY) (ALPHA CHAIN) 9606
150 2HBF 1 A HEMOGLOBIN A (N-PROPYL ISOCYANIDE) (ALPHA CHAIN) 9606
151 1Y0A 1 A, C Hemoglobin alpha chain 9606
152 1YEV 1 A, C Hemoglobin alpha chain 9606
153 1YZI 1 A Hemoglobin alpha chain 9606
154 3HXN 1 A, C Hemoglobin subunit alpha 9606
155 5UFJ 1 A, C Hemoglobin subunit alpha 9606
156 1RQ4 1 A, C Hemoglobin alpha chain 9606
157 2YRS 1 A, C, I, M Hemoglobin subunit alpha 9606
158 5KDQ 1 A, C Hemoglobin subunit alpha 9606
159 1Y7C 1 A, C Hemoglobin alpha chain 9606
160 4MQK 1 A, C, E, G Hemoglobin subunit alpha 9606
161 4M4B 1 A Hemoglobin subunit alpha 9606
162 1FSX 1 A, C HEMOGLOBIN ALPHA CHAIN 9913
163 1HGB 1 A, C HEMOGLOBIN (AQUO MET) (ALPHA CHAIN) 9606
164 1YEO 1 A, C Hemoglobin alpha chain 9606
165 1Y0C 1 A, C Hemoglobin alpha chain 9606
166 1YEU 1 A, C Hemoglobin alpha chain 9606
167 4M4A 1 A Hemoglobin subunit alpha 9606
168 1YH9 1 A, C Hemoglobin alpha chain 9606
169 1MKO 1 A, C Hemoglobin alpha chain 9606
170 1Y46 1 A, C Hemoglobin alpha chain 9606
171 1LJW 1 A hemoglobin alpha chain 9606
172 3ONZ 1 A Hemoglobin subunit alpha Hemoglobin Chain A 9606
173 1HHO 1 A HEMOGLOBIN A (OXY) (ALPHA CHAIN) 9606
174 1M9P 1 A, C Hemoglobin alpha chain 9606
175 1BIJ 1 A, C HEMOGLOBIN A LYS B82/D82 CROSSLINKED HEMOGLOBIN 9606
176 1HAB 1 A, C HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY FORM 9606
177 1R1X 1 A Hemoglobin alpha chain 9606
178 3R5I 1 A, C Hemoglobin subunit alpha 9606
179 3OO5 1 A Hemoglobin subunit alpha 9606
180 1NEJ 1 A, C Hemoglobin alpha chain alpha chain 9606
181 4MQC 1 A Hemoglobin subunit alpha 9606
182 4NI0 1 A Hemoglobin subunit alpha 9606
183 1SI4 1 A, C Hemoglobin alpha chain 9606
184 1RVW 1 A HEMOGLOBIN CARBONMONXY HEMES 9606
185 1YIE 1 A, C Hemoglobin alpha chain 9606
186 1B86 1 A, C PROTEIN (HEMOGLOBIN; ALPHA CHAIN) 9606
187 5EE4 2 C, E Hemoglobin subunit alpha 9606
188 1HAC 1 A, C HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY FORM 9606
189 6BB5 1 A Hemoglobin subunit alpha 9606
190 5HY8 1 A, C, E, G, S Hemoglobin subunit alpha 9606
191 1QXD 1 A, C Hemoglobin alpha chain alpha chain 9606
192 3PI8 1 A, C Hemoglobin subunit alpha 9913
193 4FC3 1 A Hemoglobin subunit alpha 9606
194 1YE0 1 A, C Hemoglobin alpha chain 9606
195 3IC2 1 A, C Hemoglobin subunit alpha 9606
196 1YHR 1 A, C Hemoglobin alpha chain 9606
197 5KSJ 1 A, C Hemoglobin subunit alpha 9606
198 1Z8U 2 B, D Hemoglobin alpha chain 9606
199 1YFF 1 A, C, E, G Hemoglobin alpha chain 9606
200 1LFQ 1 A Hemoglobin alpha chain 9606
201 1LFT 1 A Hemoglobin alpha chain 9606
202 3B75 1 A, C, E, G, S Hemoglobin subunit alpha 9606
203 1YGF 1 A, C Hemoglobin alpha chain 9606
204 1YG5 1 A, C Hemoglobin alpha chain 9606
205 1LFL 1 A, C, P, R Hemoglobin alpha chain 9606
206 1YDZ 1 A, C Hemoglobin alpha chain 9606
207 1YEN 1 A, C Hemoglobin alpha chain 9606
208 5X2S 1 A, C, E, G, I, K Hemoglobin subunit alpha 9606
209 1NIH 1 A, C HEMOGLOBIN (NICKELOUS DEOXY) (ALPHA CHAIN) 9606
210 1YGD 1 A, C Hemoglobin alpha chain 9606
211 5X2U 1 A, C, E, G, I, K Hemoglobin subunit alpha 9606
212 1A9W 1 A, C HEMOGLOBIN (ALPHA CHAIN) HUMAN GOWER II EMBRYONIC HEMOGLOBIN 9606
213 1YEQ 1 A, C Hemoglobin alpha chain 9606
214 1FN3 1 A, C HEMOGLOBIN ALPHA CHAIN 9606
215 1Y8W 1 A, C Hemoglobin alpha chain 9606
216 5HU6 1 A Hemoglobin subunit alpha 9606
217 1LFV 1 A Hemoglobin alpha chain 9606
218 5X2T 1 A, C, E, G, I, K Hemoglobin subunit alpha 9606
219 4N7O 1 A, C, E, G, I, K Hemoglobin subunit alpha UNP residues 2-142 9606
220 3LQD 1 A, C Hemoglobin subunit alpha 9983
221 4XS0 1 A Hemoglobin subunit alpha 9606
222 1LFZ 1 A Hemoglobin alpha chain 9606
223 4N7N 1 A, C, E, G, I, K Hemoglobin subunit alpha UNP residues 2-142 9606
224 1JY7 1 A, C, P, R, U, W Hemoglobin alpha chain 9606
225 5JDO 3 C Hemoglobin subunit alpha 9606
226 5JDO 5 E Hemoglobin subunit alpha 9606
227 5X2R 1 A, C, E, G, I, K Hemoglobin subunit alpha 9606
228 3D17 1 A, C Hemoglobin subunit alpha 9606
229 3OVU 3 C Hemoglobin subunit alpha 9606
230 4N7P 1 A, C, E, G, I, K Hemoglobin subunit alpha UNP residues 2-142 9606
231 1LFY 1 A Hemoglobin alpha chain 9606
232 3S48 2 C, D Hemoglobin subunit alpha 9606
233 3SZK 1 A, D Hemoglobin subunit alpha 9606
234 1Y01 2 B Hemoglobin alpha chain 9606
235 3IA3 2 B, D Hemoglobin subunit alpha 9606
236 3PI9 1 A, C Hemoglobin subunit alpha 9913
237 1HBS 1 A, C, E, G HEMOGLOBIN S (DEOXY) (ALPHA CHAIN) 9606
238 4WJG 1 A, F, K, P, U, Z Hemoglobin subunit alpha 9606
239 1CMY 1 A, C HEMOGLOBIN YPSILANTI (CARBONMONOXY) (ALPHA CHAIN) 9606
240 3ODQ 1 A, C Hemoglobin subunit alpha 9606
241 5VMM 1 A, C Hemoglobin subunit alpha 9606
242 3CIU 1 A, C Hemoglobin subunit alpha 9913
243 4IJ2 1 A, C Hemoglobin subunit alpha 9606
244 1YE1 1 A, C Hemoglobin alpha chain 9606
245 5NI1 1 A, C Hemoglobin subunit alpha 9606
246 2M6Z 1 A, C Hemoglobin subunit alpha 9606
247 3KMF 1 A, E Hemoglobin subunit alpha 9606
248 2DXM 1 A, C Hemoglobin subunit alpha 9606
249 2H35 1 A, C Hemoglobin alpha subunit 9606
250 1HDA 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9913
251 1COH 1 A, C HEMOGLOBIN (FERROUS CARBONMONOXY) (ALPHA CHAIN) 9606
252 1HCO 1 A HEMOGLOBIN (CARBONMONOXY) (ALPHA CHAIN) 9606
253 2HCO 1 A HEMOGLOBIN (CARBONMONOXY) (ALPHA CHAIN) 9606
254 1FDH 1 A, B HEMOGLOBIN F (DEOXY) (ALPHA CHAIN) 9606