Sequence Similarity Clusters for the Entities in PDB 1MKO

Entity #1 | Chains: A,C
Hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 146 222 22
95 % 168 250 20 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 169 251 21
70 % 203 332 16
50 % 482 754 4
40 % 487 759 8
30 % 926 1226 8
Entity #2 | Chains: B,D
Hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 109 169 51
95 % 175 250 19 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 178 255 19
70 % 219 346 14
50 % 483 754 4
40 % 488 759 8
30 % 927 1226 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1IRD 1 A Hemoglobin alpha chain 9606
2 2DN2 1 A, C Hemoglobin alpha subunit 9606
3 2DN3 1 A Hemoglobin alpha subunit 9606
4 2DN1 1 A Hemoglobin alpha subunit 9606
5 1J41 1 A, C, E, G Hemoglobin alpha Chain 9606
6 1J40 1 A, C, E, G Hemoglobin alpha Chain 9606
7 1BAB 1 A, C HEMOGLOBIN THIONVILLE (DEOXY) (ALPHA CHAIN) 9606
8 3S66 1 A Hemoglobin subunit alpha 9606
9 2D5Z 1 A, C Hemoglobin alpha subunit 9606
10 1BZ0 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
11 1UIW 1 A, C, E, G Hemoglobin alpha chain 9606
12 1J3Y 1 A, C, E, G Hemoglobin alpha Chain 9606
13 1THB 1 A, C HEMOGLOBIN A (OXY) (ALPHA CHAIN) 9606
14 1BZZ 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
15 5WOG 1 A, B Hemoglobin subunit alpha 9606
16 1J3Z 1 A, C, E, G Hemoglobin alpha Chain 9606
17 1BZ1 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
18 5WOH 1 A, C Hemoglobin subunit alpha 9606
19 4HHB 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
20 1DXV 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
21 1DXT 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
22 1DXU 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
23 6BWP 1 A, C Hemoglobin subunit alpha 9606
24 3DUT 1 A, C Hemoglobin subunit alpha 9606
25 1SDK 1 A, C HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY 9606
26 2HHB 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
27 1QSH 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
28 4ROL 1 A, C Hemoglobin subunit alpha 9606
29 1SDL 1 A, C HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY 9606
30 1BBB 1 A, C HEMOGLOBIN A (CARBONMONOXY) (ALPHA CHAIN) 9606
31 1QSI 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
32 4MQG 1 A Hemoglobin subunit alpha 9606
33 2D60 1 A, C Hemoglobin alpha subunit 9606
34 2W6V 1 A, C HEMOGLOBIN SUBUNIT ALPHA CHAIN ALPHA, RESIDUES 2-142 9606
35 1GBU 1 A, C HEMOGLOBIN DEOXY 9606
36 1NQP 1 A, C Hemoglobin alpha chain 9606
37 1A01 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
38 1A3N 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
39 5E83 1 A, C Hemoglobin subunit alpha 9606
40 1YE2 1 A, C Hemoglobin alpha chain 9606
41 5KSI 1 A, C Hemoglobin subunit alpha 9606
42 5E6E 1 A Hemoglobin subunit alpha 9606
43 4MQJ 1 A, C, E, G Hemoglobin subunit alpha 9606
44 3HHB 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
45 1K0Y 1 A, C hemoglobin alpha chain 9606
46 1YVQ 1 A, C Hemoglobin alpha chain 9606
47 5UCU 1 A Hemoglobin subunit alpha 9606
48 1C7B 1 A, C PROTEIN (DEOXYHEMOGLOBIN (ALPHA CHAIN)) 9606
49 3NL7 1 A Hemoglobin subunit alpha 9606
50 1SHR 1 A, C Hemoglobin alpha chain 9606
51 1Y4V 1 A, C Hemoglobin alpha chain 9606
52 5URC 1 A, C Hemoglobin subunit alpha 9606
53 1G9V 1 A, C HEMOGLOBIN ALPHA CHAIN 9606
54 1YVT 1 A Hemoglobin alpha chain 9606
55 1CLS 1 A, C HEMOGLOBIN CROSS-LINKED DEOXY FORM 9606
56 1QXE 1 A, C Hemoglobin alpha chain alpha chain 9606
57 1RQ3 1 A, C Hemoglobin alpha chain 9606
58 1XZ2 1 A, C Hemoglobin alpha chain 9606
59 3QJE 1 A, C Hemoglobin subunit alpha 9606
60 4L7Y 1 A, C Hemoglobin subunit alpha 9606
61 5SW7 1 A Hemoglobin subunit alpha 9606
62 3D7O 1 A Hemoglobin subunit alpha 9606
63 3IC0 1 A, C Hemoglobin subunit alpha 9606
64 1BUW 1 A, C PROTEIN (HEMOGLOBIN) THE SULFHYDRYL GROUPS OF CYSTEINE 93 OF BETA SUBUNITS ARE S-NITROSYLATED. THE HEME GROUPS ARE NITROSYLATED. 9606
65 1XXT 1 A, C Hemoglobin alpha chain 9606
66 1HBB 1 A, C HEMOGLOBIN A (DEOXY) (ALPHA CHAIN) 9606
67 1KD2 1 A, C Hemoglobin alpha chain 9606
68 5E29 1 A, C Hemoglobin subunit alpha 9606
69 3WHM 1 A, E Hemoglobin subunit alpha 9606
70 1A0Z 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
71 1Y83 1 A, C Hemoglobin alpha chain 9606
72 1A00 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
73 1Y7Z 1 A, C Hemoglobin alpha chain 9606
74 4N8T 1 A Hemoglobin subunit alpha 9606
75 2HBS 1 A, C, E, G HEMOGLOBIN S (DEOXY), ALPHA CHAIN 9606
76 1Y7D 1 A, C Hemoglobin alpha chain 9606
77 1Y4G 1 A, C Hemoglobin alpha chain 9606
78 4MQI 1 A Hemoglobin subunit alpha 9606
79 1Y45 1 A, C Hemoglobin alpha chain 9606
80 4NI1 1 A Hemoglobin subunit alpha 9606
81 1J7W 1 A, C hemoglobin alpha chain 9606
82 2HHD 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
83 1YIH 1 A, C Hemoglobin alpha chain 9606
84 1K1K 1 A HEMOGLOBIN ALPHA CHAIN 9606
85 3OO4 1 A Hemoglobin subunit alpha 9606
86 1GBV 1 A, C HEMOGLOBIN ALPHA-OXY, BETA-DEOXY, T STATE 9606
87 2HBE 1 A HEMOGLOBIN A (N-BUTYL ISOCYANIDE) (ALPHA CHAIN) 9606
88 1Y4F 1 A, C Hemoglobin alpha chain 9606
89 4ROM 1 A, C Hemoglobin subunit alpha 9606
90 1Y5J 1 A, C Hemoglobin alpha chain 9606
91 1Y4P 1 A, C Hemoglobin alpha chain 9606
92 1Y2Z 1 A, C Hemoglobin alpha chain 9606
93 4X0L 1 A Hemoglobin subunit alpha 9606
94 1HDB 1 A, C HEMOGLOBIN (DEOXY) BETA-V67T ALPHA-BETA-ALPHA-BETA TETRAMER 9606
95 1YHE 1 A, C Hemoglobin alpha chain 9606
96 5U3I 1 A, C Hemoglobin subunit alpha 9606
97 3S65 1 A, C Hemoglobin subunit alpha 9606
98 6HBW 1 A, C PROTEIN (HEMOGLOBIN ALPHA 1) 9606
99 1Y31 1 A, C Hemoglobin alpha chain 9606
100 1Y0D 1 A, C Hemoglobin alpha chain Residues 1-140 9606
101 3QJC 1 A Hemoglobin subunit alpha 9606
102 1Y85 1 A, C Hemoglobin alpha chain 9606
103 1HBA 1 A, C HEMOGLOBIN ROTHSCHILD (DEOXY) (ALPHA CHAIN) 9606
104 2HBC 1 A HEMOGLOBIN A (ETHYL ISOCYANIDE) (ALPHA CHAIN) 9606
105 1Y0W 1 A, C Hemoglobin alpha chain 9606
106 6BWU 1 A Hemoglobin subunit alpha 9606
107 1Y0T 1 A, C Hemoglobin alpha chain 9606
108 1Y4Q 1 A, C Hemoglobin alpha chain 9606
109 1Y35 1 A, C Hemoglobin alpha chain 9606
110 1Y5F 1 A, C Hemoglobin alpha chain 9606
111 3WCP 1 A, C Hemoglobin subunit alpha 9606
112 1A0U 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
113 1RPS 1 A, C Hemoglobin alpha chain 9606
114 1Y7G 1 A, C Hemoglobin alpha chain 9606
115 1Y5K 1 A, C Hemoglobin alpha chain 9606
116 1Y22 1 A, C Hemoglobin alpha chain 9606
117 1O1K 1 A, C Hemoglobin Alpha chain 9606
118 1RQA 1 A, C Hemoglobin alpha chain 9606
119 1Y4R 1 A, C Hemoglobin alpha chain 9606
120 1GZX 1 A, C HEMOGLOBIN ALPHA CHAIN LIGANDED T STATE 9606
121 1Y4B 1 A, C Hemoglobin alpha chain 9606
122 2HHE 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
123 2HBD 1 A HEMOGLOBIN A (METHYL ISOCYANIDE) (ALPHA CHAIN) 9606
124 3P5Q 1 A Hemoglobin subunit alpha 9606
125 1DKE 1 A, C HEMOGLOBIN: ALPHA CHAIN 9606
126 1HGA 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
127 1HGC 1 A, C HEMOGLOBIN (OXY) (ALPHA CHAIN) 9606
128 2HBF 1 A HEMOGLOBIN A (N-PROPYL ISOCYANIDE) (ALPHA CHAIN) 9606
129 1Y0A 1 A, C Hemoglobin alpha chain 9606
130 1YEV 1 A, C Hemoglobin alpha chain 9606
131 1YZI 1 A Hemoglobin alpha chain 9606
132 3HXN 1 A, C Hemoglobin subunit alpha 9606
133 5UFJ 1 A, C Hemoglobin subunit alpha 9606
134 1RQ4 1 A, C Hemoglobin alpha chain 9606
135 2YRS 1 A, C, I, M Hemoglobin subunit alpha 9606
136 5KDQ 1 A, C Hemoglobin subunit alpha 9606
137 1Y7C 1 A, C Hemoglobin alpha chain 9606
138 4MQK 1 A, C, E, G Hemoglobin subunit alpha 9606
139 4M4B 1 A Hemoglobin subunit alpha 9606
140 1HGB 1 A, C HEMOGLOBIN (AQUO MET) (ALPHA CHAIN) 9606
141 1YEO 1 A, C Hemoglobin alpha chain 9606
142 1Y0C 1 A, C Hemoglobin alpha chain 9606
143 1YEU 1 A, C Hemoglobin alpha chain 9606
144 4M4A 1 A Hemoglobin subunit alpha 9606
145 1YH9 1 A, C Hemoglobin alpha chain 9606
146 1MKO 1 A, C Hemoglobin alpha chain 9606
147 1Y46 1 A, C Hemoglobin alpha chain 9606
148 1LJW 1 A hemoglobin alpha chain 9606
149 3ONZ 1 A Hemoglobin subunit alpha Hemoglobin Chain A 9606
150 1HHO 1 A HEMOGLOBIN A (OXY) (ALPHA CHAIN) 9606
151 1M9P 1 A, C Hemoglobin alpha chain 9606
152 1BIJ 1 A, C HEMOGLOBIN A LYS B82/D82 CROSSLINKED HEMOGLOBIN 9606
153 1HAB 1 A, C HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY FORM 9606
154 3R5I 1 A, C Hemoglobin subunit alpha 9606
155 3OO5 1 A Hemoglobin subunit alpha 9606
156 1NEJ 1 A, C Hemoglobin alpha chain alpha chain 9606
157 4NI0 1 A Hemoglobin subunit alpha 9606
158 1SI4 1 A, C Hemoglobin alpha chain 9606
159 1YIE 1 A, C Hemoglobin alpha chain 9606
160 1B86 1 A, C PROTEIN (HEMOGLOBIN; ALPHA CHAIN) 9606
161 5EE4 2 C, E Hemoglobin subunit alpha 9606
162 1HAC 1 A, C HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY FORM 9606
163 6BB5 1 A Hemoglobin subunit alpha 9606
164 5HY8 1 A, C, E, G, S Hemoglobin subunit alpha 9606
165 1QXD 1 A, C Hemoglobin alpha chain alpha chain 9606
166 4FC3 1 A Hemoglobin subunit alpha 9606
167 1YE0 1 A, C Hemoglobin alpha chain 9606
168 3IC2 1 A, C Hemoglobin subunit alpha 9606
169 1YHR 1 A, C Hemoglobin alpha chain 9606
170 5KSJ 1 A, C Hemoglobin subunit alpha 9606
171 1Z8U 2 B, D Hemoglobin alpha chain 9606
172 1YFF 1 A, C, E, G Hemoglobin alpha chain 9606
173 1LFQ 1 A Hemoglobin alpha chain 9606
174 1LFT 1 A Hemoglobin alpha chain 9606
175 3B75 1 A, C, E, G, S Hemoglobin subunit alpha 9606
176 1YGF 1 A, C Hemoglobin alpha chain 9606
177 1YG5 1 A, C Hemoglobin alpha chain 9606
178 1LFL 1 A, C, P, R Hemoglobin alpha chain 9606
179 1YDZ 1 A, C Hemoglobin alpha chain 9606
180 1YEN 1 A, C Hemoglobin alpha chain 9606
181 5X2S 1 A, C, E, G, I, K Hemoglobin subunit alpha 9606
182 1NIH 1 A, C HEMOGLOBIN (NICKELOUS DEOXY) (ALPHA CHAIN) 9606
183 1YGD 1 A, C Hemoglobin alpha chain 9606
184 5X2U 1 A, C, E, G, I, K Hemoglobin subunit alpha 9606
185 1A9W 1 A, C HEMOGLOBIN (ALPHA CHAIN) HUMAN GOWER II EMBRYONIC HEMOGLOBIN 9606
186 1YEQ 1 A, C Hemoglobin alpha chain 9606
187 1FN3 1 A, C HEMOGLOBIN ALPHA CHAIN 9606
188 5HU6 1 A Hemoglobin subunit alpha 9606
189 1LFV 1 A Hemoglobin alpha chain 9606
190 5X2T 1 A, C, E, G, I, K Hemoglobin subunit alpha 9606
191 4N7O 1 A, C, E, G, I, K Hemoglobin subunit alpha UNP residues 2-142 9606
192 4XS0 1 A Hemoglobin subunit alpha 9606
193 1LFZ 1 A Hemoglobin alpha chain 9606
194 4N7N 1 A, C, E, G, I, K Hemoglobin subunit alpha UNP residues 2-142 9606
195 1JY7 1 A, C, P, R, U, W Hemoglobin alpha chain 9606
196 5JDO 3 C Hemoglobin subunit alpha 9606
197 5JDO 5 E Hemoglobin subunit alpha 9606
198 5X2R 1 A, C, E, G, I, K Hemoglobin subunit alpha 9606
199 3D17 1 A, C Hemoglobin subunit alpha 9606
200 3OVU 3 C Hemoglobin subunit alpha 9606
201 4N7P 1 A, C, E, G, I, K Hemoglobin subunit alpha UNP residues 2-142 9606
202 1LFY 1 A Hemoglobin alpha chain 9606
203 3S48 2 C, D Hemoglobin subunit alpha 9606
204 3SZK 1 A, D Hemoglobin subunit alpha 9606
205 1Y01 2 B Hemoglobin alpha chain 9606
206 3IA3 2 B, D Hemoglobin subunit alpha 9606
207 1HBS 1 A, C, E, G HEMOGLOBIN S (DEOXY) (ALPHA CHAIN) 9606
208 4WJG 1 A, F, K, P, U, Z Hemoglobin subunit alpha 9606
209 1CMY 1 A, C HEMOGLOBIN YPSILANTI (CARBONMONOXY) (ALPHA CHAIN) 9606
210 3ODQ 1 A, C Hemoglobin subunit alpha 9606
211 5VMM 1 A, C Hemoglobin subunit alpha 9606
212 4IJ2 1 A, C Hemoglobin subunit alpha 9606
213 1YE1 1 A, C Hemoglobin alpha chain 9606
214 5NI1 1 A, C Hemoglobin subunit alpha 9606
215 2M6Z 1 A, C Hemoglobin subunit alpha 9606
216 3KMF 1 A, E Hemoglobin subunit alpha 9606
217 2DXM 1 A, C Hemoglobin subunit alpha 9606
218 2H35 1 A, C Hemoglobin alpha subunit 9606
219 1COH 1 A, C HEMOGLOBIN (FERROUS CARBONMONOXY) (ALPHA CHAIN) 9606
220 1HCO 1 A HEMOGLOBIN (CARBONMONOXY) (ALPHA CHAIN) 9606
221 2HCO 1 A HEMOGLOBIN (CARBONMONOXY) (ALPHA CHAIN) 9606
222 1FDH 1 A, B HEMOGLOBIN F (DEOXY) (ALPHA CHAIN) 9606