Sequence Similarity Clusters for the Entities in PDB 1MKO

Entity #1 | Chains: A,C
Hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 140 214 23
95 % 164 245 19 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 165 246 21
70 % 200 327 15
50 % 476 744 4
40 % 481 749 8
30 % 905 1201 8
Entity #2 | Chains: B,D
Hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 105 164 51
95 % 171 245 18 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 174 250 19
70 % 216 341 13
50 % 477 744 4
40 % 482 749 8
30 % 906 1201 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures