Sequence Similarity Clusters for the Entities in PDB 1MKK

Entity #1 | Chains: A,B
Vascular Endothelial Growth Factor A protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46943
95 % 1 35 392 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 1 35 424
70 % 1 37 440
50 % 1 40 503
40 % 1 44 508
30 % 1 49 475

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.