Sequence Similarity Clusters for the Entities in PDB 1MKG

Entity #1 | Chains: A,B,C,D
Vascular Endothelial Growth Factor A protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24055
95 % 26 35 406 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 26 35 436
70 % 26 37 451
50 % 29 40 509
40 % 31 44 514
30 % 31 49 479

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.