Sequence Similarity Clusters for the Entities in PDB 1MKD

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
Phosphodiesterase 4D protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 4573
95 % 40 40 258 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 40 40 270
70 % 79 79 177
50 % 79 79 215
40 % 79 79 236
30 % 245 250 77

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.