Sequence Similarity Clusters for the Entities in PDB 1MKD

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
Phosphodiesterase 4D protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 5027
95 % 41 41 273 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 41 41 288
70 % 80 80 182
50 % 80 80 223
40 % 80 80 240
30 % 275 280 69

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures