Sequence Similarity Clusters for the Entities in PDB 1MKD

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
Phosphodiesterase 4D protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 4901
95 % 40 40 278 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 40 40 290
70 % 79 79 183
50 % 79 79 226
40 % 79 79 243
30 % 261 266 70

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures